PF00106


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00106, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 46 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00106
Description short chain dehydrogenase

Occurence in the database

PF00106 is associated with 46 different proteins (see tab "Protein list" and "Profile")
The 46 proteins are classified into 8 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2475 FBDBKF_00655 108295 109032 -1 fabG NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family Morganella morganii S1
1 group_693 FBDBKF_02950 284805 285554 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella morganii S1
2 group_877 FBDBKF_04490 92245 93024 -1 fabG NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family Morganella morganii S1
3 group_943 FBDBKF_05130 33571 34353 1 fabG YciK family oxidoreductase Morganella morganii S1
4 group_2824 FBDBKF_10055 104708 105427 -1 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG Morganella morganii S1
5 group_1778 FBDBKF_12970 94487 95272 1 yqjQ SDR family oxidoreductase Morganella morganii S1
6 group_3046 FBDBKF_18190 3920 4708 1 yqjQ Short-chain dehydrogenase Morganella morganii S1
7 group_2475 EHELCC_00890 199836 200573 1 fabG NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family Morganella morganii S2
8 group_693 EHELCC_03420 672625 673374 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella morganii S2
9 group_2824 EHELCC_04855 296673 297392 -1 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG Morganella morganii S2
10 group_877 EHELCC_05780 151702 152481 -1 fabG NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family Morganella morganii S2
11 group_1778 EHELCC_06285 264519 265304 1 yqjQ SDR family oxidoreductase Morganella morganii S2
12 group_943 EHELCC_12460 147141 147923 -1 fabG YciK family oxidoreductase Morganella morganii S2
13 group_3046 EHELCC_18225 3793 4581 1 yqjQ Short-chain dehydrogenase Morganella morganii S2
14 group_693 NLDBIP_00040 6762 7511 -1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella morganii S4
15 group_2475 NLDBIP_02570 479563 480300 -1 fabG NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family Morganella morganii S4
16 group_2824 NLDBIP_04855 296469 297188 -1 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG Morganella morganii S4
17 group_877 NLDBIP_06100 192767 193546 -1 fabG NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family Morganella morganii S4
18 group_1778 NLDBIP_06605 305584 306369 1 yqjQ SDR family oxidoreductase Morganella morganii S4
19 group_943 NLDBIP_12800 147096 147878 -1 fabG YciK family oxidoreductase Morganella morganii S4
20 group_3046 NLDBIP_18150 3994 4782 1 yqjQ Short-chain dehydrogenase Morganella morganii S4
21 group_693 LHKJJB_01995 385174 385923 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella morganii S3
22 group_877 LHKJJB_02980 170291 171070 -1 fabG NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family Morganella morganii S3
23 group_1778 LHKJJB_03485 283108 283893 1 yqjQ SDR family oxidoreductase Morganella morganii S3
24 group_2475 LHKJJB_04085 86804 87541 -1 fabG NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family Morganella morganii S3
25 group_943 LHKJJB_12660 147141 147923 -1 fabG YciK family oxidoreductase Morganella morganii S3
26 group_2824 LHKJJB_13775 38190 38909 1 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG Morganella morganii S3
27 group_3046 LHKJJB_18345 3832 4620 1 yqjQ Short-chain dehydrogenase Morganella morganii S3
28 group_693 HKOGLL_02035 390685 391434 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella morganii S5
29 group_2475 HKOGLL_02960 200041 200778 1 fabG NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family Morganella morganii S5
30 group_877 HKOGLL_06455 92155 92934 -1 fabG NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family Morganella morganii S5
31 group_1778 HKOGLL_06960 204972 205757 1 yqjQ SDR family oxidoreductase Morganella morganii S5
32 group_943 HKOGLL_11275 147141 147923 -1 fabG YciK family oxidoreductase Morganella morganii S5
33 group_2824 HKOGLL_12760 105489 106208 -1 ydfG NADP-dependent 3-hydroxy acid dehydrogenase YdfG Morganella morganii S5
34 group_3046 HKOGLL_18080 3810 4598 1 yqjQ Short-chain dehydrogenase Morganella morganii S5
35 group_2824 F4V73_RS00280 66258 66977 1 SDR family oxidoreductase Morganella psychrotolerans
36 group_3046 F4V73_RS01735 384232 385020 1 SDR family NAD(P)-dependent oxidoreductase Morganella psychrotolerans
37 group_341 F4V73_RS05015 1067874 1068737 -1 SDR family NAD(P)-dependent oxidoreductase Morganella psychrotolerans
38 group_693 F4V73_RS05390 1144891 1145640 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Morganella psychrotolerans
39 group_943 F4V73_RS05585 1188616 1189398 1 YciK family oxidoreductase Morganella psychrotolerans
40 group_877 F4V73_RS08945 1857269 1858048 -1 acetoin reductase Morganella psychrotolerans
41 group_1778 F4V73_RS16155 34489 35274 1 SDR family oxidoreductase Morganella psychrotolerans
42 group_693 PMI_RS06215 1362212 1362961 1 ydfG bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG Proteus mirabilis HI4320
43 group_943 PMI_RS06450 1415895 1416656 1 YciK family oxidoreductase Proteus mirabilis HI4320
44 group_877 PMI_RS10305 2259253 2260032 -1 acetoin reductase Proteus mirabilis HI4320
45 group_1778 PMI_RS10685 2349605 2350390 1 SDR family oxidoreductase Proteus mirabilis HI4320