Orthogroup:group_3049


Homologs in group_3049

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_18215 FBDBKF_18215 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_18250 EHELCC_18250 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_18175 NLDBIP_18175 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_18370 LHKJJB_18370 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_18105 HKOGLL_18105 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
PMI_RS15430 PMI_RS15430 Proteus mirabilis HI4320 - LysR family transcriptional regulator

Distribution of group_3049 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3049 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3049

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_3049.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 lysR 5
2 - 1

Product

# Product Occurence
1 DNA-binding transcriptional regulator, LysR family 5
2 LysR family transcriptional regulator 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0583 6 K Transcription (K) DNA-binding transcriptional regulator, LysR family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00126 6 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 6 LysR substrate binding domain

Annotations of the 227 SwissProt hits

Annotation Number of occurrences
Carbapenem-hydrolyzing beta-lactamase transcriptional activator 2
DNA-binding transcriptional dual regulator OxyR 1
Glycine cleavage system transcriptional activator 3
Glycine cleavage system transcriptional activator homolog 1
HTH-type transcriptional activator AllS 11
HTH-type transcriptional activator AmpR 5
HTH-type transcriptional activator BauR 1
HTH-type transcriptional activator CmpR 1
HTH-type transcriptional activator IlvY 3
HTH-type transcriptional activator TtdR 5
HTH-type transcriptional regulator AbaB 1
HTH-type transcriptional regulator AbgR 1
HTH-type transcriptional regulator AdmX 1
HTH-type transcriptional regulator AlsR 1
HTH-type transcriptional regulator BbuR 1
HTH-type transcriptional regulator BenM 1
HTH-type transcriptional regulator BlaA 1
HTH-type transcriptional regulator BsdA 1
HTH-type transcriptional regulator BudR 1
HTH-type transcriptional regulator BudR (Fragment) 1
HTH-type transcriptional regulator CatM 1
HTH-type transcriptional regulator CatR 1
HTH-type transcriptional regulator CbbR 2
HTH-type transcriptional regulator CfxR 1
HTH-type transcriptional regulator CitR 1
HTH-type transcriptional regulator ClcR 1
HTH-type transcriptional regulator CynR 2
HTH-type transcriptional regulator CysB 6
HTH-type transcriptional regulator CysL 1
HTH-type transcriptional regulator CzcR 7
HTH-type transcriptional regulator DgdR 1
HTH-type transcriptional regulator EstR 1
HTH-type transcriptional regulator GalR 1
HTH-type transcriptional regulator GbpR 2
HTH-type transcriptional regulator GltR 1
HTH-type transcriptional regulator HdfR 48
HTH-type transcriptional regulator IlvR 1
HTH-type transcriptional regulator IlvY 1
HTH-type transcriptional regulator MetR 6
HTH-type transcriptional regulator NmoR 1
HTH-type transcriptional regulator PcaQ 2
HTH-type transcriptional regulator PecT 1
HTH-type transcriptional regulator PerR 1
HTH-type transcriptional regulator ShiR 1
HTH-type transcriptional regulator SoxR 1
HTH-type transcriptional regulator SsuR 1
HTH-type transcriptional regulator TcbR 1
HTH-type transcriptional regulator TdcA 3
HTH-type transcriptional regulator TdfR 1
HTH-type transcriptional regulator TfdS 1
HTH-type transcriptional regulator TfdT 1
HTH-type transcriptional regulator TrpI 2
HTH-type transcriptional regulator TsaR 1
HTH-type transcriptional regulator TtuA 2
HTH-type transcriptional regulator XapR 1
HTH-type transcriptional regulator YhaJ 1
HTH-type transcriptional regulator YjiE 1
HTH-type transcriptional regulator YofA 2
HTH-type transcriptional regulator YtlI 1
Hca operon transcriptional activator HcaR 1
Hydrogen peroxide-inducible genes activator 5
Nitrogen assimilation regulatory protein nac 2
Octopine catabolism/uptake operon regulatory protein OccR 3
PCP degradation transcriptional activation protein 1
Probable HTH-type transcriptional regulator LrhA 2
Probable HTH-type transcriptional regulator LrrA 1
Probable HTH-type transcriptional regulator YhaJ 1
Probable RuBisCO transcriptional regulator 15
Probable cat1 operon transcriptional activator 1
Probable hydrogen peroxide-inducible genes activator 4
Probable hydrogen peroxide-inducible genes activator (Fragment) 1
Probable nitrogen assimilation transcriptional activator 2
Putative HTH-type transcriptional regulator protein PtxE (Fragment) 1
Regulatory protein NocR 2
RuBisCO operon transcriptional regulator 1
SDS degradation transcriptional activation protein 1
Small neutral protease regulatory protein 3
Transcriptional activator protein LysR 1
Transcriptional dual regulator GltC 1
Uncharacterized HTH-type transcriptional regulator HI_0775 1
Uncharacterized HTH-type transcriptional regulator YafC 1
Uncharacterized HTH-type transcriptional regulator YahB 1
Uncharacterized HTH-type transcriptional regulator YbhD 1
Uncharacterized HTH-type transcriptional regulator YcaN 1
Uncharacterized HTH-type transcriptional regulator YcgK 1
Uncharacterized HTH-type transcriptional regulator YdcI 1
Uncharacterized HTH-type transcriptional regulator YeeY 1
Uncharacterized HTH-type transcriptional regulator YfeR 2
Uncharacterized HTH-type transcriptional regulator YfiE 1
Uncharacterized HTH-type transcriptional regulator YkuM 1
Uncharacterized HTH-type transcriptional regulator YneJ 1
Uncharacterized HTH-type transcriptional regulator YnfL 1
Uncharacterized HTH-type transcriptional regulator YoaU 1
Uncharacterized HTH-type transcriptional regulator YraN 1
Uncharacterized HTH-type transcriptional regulator YusT 1
Uncharacterized HTH-type transcriptional regulator YvbU 1
Uncharacterized HTH-type transcriptional regulator YwbI 1
Uncharacterized HTH-type transcriptional regulator YwqM 1
Uncharacterized HTH-type transcriptional regulator YxjO 1
Uncharacterized HTH-type transcriptional regulator YybE 1
Uncharacterized HTH-type transcriptional regulator in ibpB-leuC intergenic region 1
Uncharacterized HTH-type transcriptional regulator in lacR 5'region (Fragment) 1

Protein length

Min length 295
Max length 305
Mean length (sd) 303.3 (4.1)
Median length 305.0

Protein length distribution