K01679


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K01679, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K01679
KO K01679
Description fumarate hydratase, class II [EC:4.2.1.2]

KO part of 10 pathways

Citrate cycle (TCA cycle)
Pyruvate metabolism
Carbon fixation pathways in prokaryotes
Metabolic pathways
Biosynthesis of secondary metabolites
Microbial metabolism in diverse environments
Carbon metabolism
Cushing syndrome
Pathways in cancer
Renal cell carcinoma

KO part of 4 modules

M00009 Central carbohydrate metabolism Citrate cycle (TCA cycle, Krebs cycle)
M00011 Central carbohydrate metabolism Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
M00173 Carbon fixation Reductive citrate cycle (Arnon-Buchanan cycle)
M00376 Carbon fixation 3-Hydroxypropionate bi-cycle

Occurence in the database

K01679 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_920 PMI_RS06255 1369935 1371332 -1 fumC class II fumarate hydratase Proteus mirabilis HI4320
1 group_920 FBDBKF_04990 1882 3276 -1 fumC class II fumarate hydratase Morganella morganii S1
2 group_920 EHELCC_12600 178218 179612 1 fumC class II fumarate hydratase Morganella morganii S2
3 group_920 NLDBIP_12940 178173 179567 1 fumC class II fumarate hydratase Morganella morganii S4
4 group_920 LHKJJB_12800 178218 179612 1 fumC class II fumarate hydratase Morganella morganii S3
5 group_920 HKOGLL_11415 178218 179612 1 fumC class II fumarate hydratase Morganella morganii S5
6 group_920 F4V73_RS05435 1154543 1155937 -1 fumC class II fumarate hydratase Morganella psychrotolerans