Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Kegg Ortholog K00873
Protein list: lists the 15 occurences of the Kegg Ortholog within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Kegg Ortholog of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Ortholog has been clustered.
Orthogroups are shown in red if they are annotated with that particular Kegg Ortholog in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Kegg Ortholog prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Ortholog.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Ortholog prediction.
KO part of 12 pathways
KO part of 2 modules
M00001 | Central carbohydrate metabolism | Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate |
M00002 | Central carbohydrate metabolism | Glycolysis, core module involving three-carbon compounds |
Occurence in the database
K00873 is associated with 15 different proteins |
The 15 proteins are classified into 2 different orthogroup(s) |
Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
---|---|---|---|---|---|---|---|---|
0 | group_229 | FBDBKF_02100 | 108274 | 109716 | -1 | pyk | pyruvate kinase | Morganella morganii S1 |
1 | group_229 | EHELCC_02570 | 496094 | 497536 | -1 | pyk | pyruvate kinase | Morganella morganii S2 |
2 | group_229 | NLDBIP_00890 | 182600 | 184042 | 1 | pyk | pyruvate kinase | Morganella morganii S4 |
3 | group_229 | LHKJJB_01145 | 208643 | 210085 | -1 | pyk | pyruvate kinase | Morganella morganii S3 |
4 | group_229 | HKOGLL_01185 | 214154 | 215596 | -1 | pyk | pyruvate kinase | Morganella morganii S5 |
5 | group_1095 | FBDBKF_05790 | 160399 | 161811 | 1 | pykF | pyruvate kinase PykF | Morganella morganii S1 |
6 | group_1095 | EHELCC_11800 | 19683 | 21095 | -1 | pykF | pyruvate kinase PykF | Morganella morganii S2 |
7 | group_1095 | NLDBIP_12140 | 19638 | 21050 | -1 | pykF | pyruvate kinase PykF | Morganella morganii S4 |
8 | group_1095 | LHKJJB_12000 | 19683 | 21095 | -1 | pykF | pyruvate kinase PykF | Morganella morganii S3 |
9 | group_1095 | HKOGLL_10615 | 19683 | 21095 | -1 | pykF | pyruvate kinase PykF | Morganella morganii S5 |
10 | group_1095 | F4V73_RS03535 | 755674 | 757086 | -1 | pykF | pyruvate kinase PykF | Morganella psychrotolerans |
11 | group_229 | F4V73_RS04465 | 944460 | 945902 | -1 | pyk | pyruvate kinase | Morganella psychrotolerans |
12 | group_229 | PMI_RS05575 | 1215704 | 1217146 | -1 | pyk | pyruvate kinase | Proteus mirabilis HI4320 |
13 | group_1095 | PMI_RS06795 | 1482432 | 1483844 | 1 | pykF | pyruvate kinase PykF | Proteus mirabilis HI4320 |
14 | group_229 | PMI_RS11920 | 2634314 | 2635765 | 1 | pyk | pyruvate kinase | Proteus mirabilis HI4320 |