K00240


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K00240, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K00240
KO K00240
Description succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]

KO part of 8 pathways

Citrate cycle (TCA cycle)
Oxidative phosphorylation
Butanoate metabolism
Carbon fixation pathways in prokaryotes
Metabolic pathways
Biosynthesis of secondary metabolites
Microbial metabolism in diverse environments
Carbon metabolism

KO part of 6 modules

M00009 Central carbohydrate metabolism Citrate cycle (TCA cycle, Krebs cycle)
M00011 Central carbohydrate metabolism Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
M00149 ATP synthesis Succinate dehydrogenase, prokaryotes
M00173 Carbon fixation Reductive citrate cycle (Arnon-Buchanan cycle)
M00374 Carbon fixation Dicarboxylate-hydroxybutyrate cycle
M00376 Carbon fixation 3-Hydroxypropionate bi-cycle

Occurence in the database

K00240 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1520 PMI_RS02795 612788 613504 1 succinate dehydrogenase iron-sulfur subunit Proteus mirabilis HI4320
1 group_1520 FBDBKF_09825 61954 62670 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S1
2 group_1520 EHELCC_04625 253919 254635 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S2
3 group_1520 NLDBIP_04625 253715 254431 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S4
4 group_1520 LHKJJB_14005 80947 81663 1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S3
5 group_1520 HKOGLL_12530 62735 63451 -1 sdhB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit Morganella morganii S5
6 group_1520 F4V73_RS00520 109761 110477 1 succinate dehydrogenase iron-sulfur subunit Morganella psychrotolerans