K00228


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K00228, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K00228
KO K00228
Description coproporphyrinogen III oxidase [EC:1.3.3.3]

KO part of 4 pathways

Porphyrin metabolism
Metabolic pathways
Biosynthesis of secondary metabolites
Biosynthesis of cofactors

KO part of 2 modules

M00121 Cofactor and vitamin metabolism Heme biosynthesis, plants and bacteria, glutamate => heme
M00868 Cofactor and vitamin metabolism Heme biosynthesis, animals and fungi, glycine => heme

Occurence in the database

K00228 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_508 PMI_RS09075 1976195 1977103 1 hemF oxygen-dependent coproporphyrinogen oxidase Proteus mirabilis HI4320
1 group_508 FBDBKF_01025 184938 185840 1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella morganii S1
2 group_508 EHELCC_00520 123028 123930 -1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella morganii S2
3 group_508 NLDBIP_02940 556206 557108 1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella morganii S4
4 group_508 LHKJJB_04455 163447 164349 1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella morganii S3
5 group_508 HKOGLL_02590 123233 124135 -1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella morganii S5
6 group_508 F4V73_RS07100 1473359 1474267 1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella psychrotolerans