COG4775


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4775, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane protein assembly factor BamA
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG4775 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1054 FBDBKF_05970 18562 20958 -1 bamA outer membrane protein assembly factor BamA Morganella morganii S1
1 group_2346 FBDBKF_18945 5102 6244 -1 bamA Outer membrane protein assembly factor BamA Morganella morganii S1
2 group_1054 EHELCC_09015 19134 21530 -1 bamA outer membrane protein assembly factor BamA Morganella morganii S2
3 group_2346 EHELCC_18690 5102 6244 -1 bamA Outer membrane protein assembly factor BamA Morganella morganii S2
4 group_1054 NLDBIP_09395 19134 21530 -1 bamA outer membrane protein assembly factor BamA Morganella morganii S4
5 group_2346 NLDBIP_18615 19269 20411 1 bamA Outer membrane protein assembly factor BamA Morganella morganii S4
6 group_1054 LHKJJB_08360 195708 198104 1 bamA outer membrane protein assembly factor BamA Morganella morganii S3
7 group_2346 LHKJJB_18560 5102 6244 -1 bamA Outer membrane protein assembly factor BamA Morganella morganii S3
8 group_1054 HKOGLL_07910 195708 198104 1 bamA outer membrane protein assembly factor BamA Morganella morganii S5
9 group_2346 HKOGLL_18295 5102 6244 -1 bamA Outer membrane protein assembly factor BamA Morganella morganii S5
10 group_2346 F4V73_RS13855 405906 407048 -1 BamA/TamA family outer membrane protein Morganella psychrotolerans
11 group_1054 F4V73_RS15925 192318 194711 1 bamA outer membrane protein assembly factor BamA Morganella psychrotolerans
12 group_1054 PMI_RS11245 2474089 2476497 -1 bamA outer membrane protein assembly factor BamA Proteus mirabilis HI4320
13 group_2346 PMI_RS13130 2914458 2915600 1 BamA/TamA family outer membrane protein Proteus mirabilis HI4320