COG4096


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4096, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type I site-specific restriction endonuclease, part of a restriction-modification system
Function(s) descr. Defense mechanisms (V)

Occurence in the database

COG4096 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3303 FBDBKF_10270 5642 8074 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S1
1 group_3458 FBDBKF_15665 67055 69385 -1 DEAD/DEAH box helicase Morganella morganii S1
2 group_3303 EHELCC_14605 5632 8064 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S2
3 group_3458 EHELCC_16020 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S2
4 group_3303 NLDBIP_14435 5632 8064 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S4
5 group_3458 NLDBIP_16345 11978 14308 1 DEAD/DEAH box helicase Morganella morganii S4
6 group_3303 LHKJJB_14910 133662 136094 -1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S3
7 group_3458 LHKJJB_16455 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S3
8 group_3303 HKOGLL_13530 133662 136094 -1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S5
9 group_3458 HKOGLL_16225 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S5