COG3637


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3637, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Opacity protein LomR and related surface antigens
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG3637 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3605 FBDBKF_20040 7259 8035 1 pagN Adhesin/invasin protein PagN Morganella morganii S1
1 group_3605 EHELCC_03490 6785 7561 -1 pagN Adhesin/invasin protein PagN Morganella morganii S2
2 group_3605 NLDBIP_03490 6581 7357 -1 pagN Adhesin/invasin protein PagN Morganella morganii S4
3 group_3605 LHKJJB_09320 6695 7471 -1 pagN Adhesin/invasin protein PagN Morganella morganii S3
4 group_3605 HKOGLL_09655 183581 184357 1 pagN Adhesin/invasin protein PagN Morganella morganii S5
5 group_3738 PMI_RS06560 1438086 1438622 -1 Ail/Lom family outer membrane beta-barrel protein Proteus mirabilis HI4320
6 group_3738 PMI_RS06595 1444423 1444983 1 outer membrane beta-barrel protein Proteus mirabilis HI4320
7 group_3738 PMI_RS14585 3233661 3234227 1 Ail/Lom family outer membrane beta-barrel protein Proteus mirabilis HI4320