Homologs in group_3738

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2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS06560 PMI_RS06560 23.8 Proteus mirabilis HI4320 - Ail/Lom family outer membrane beta-barrel protein
PMI_RS14585 PMI_RS14585 27.5 Proteus mirabilis HI4320 - Ail/Lom family outer membrane beta-barrel protein

Distribution of the homologs in the orthogroup group_3738

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3738

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P23988 7.16e-07 50 25 5 160 3 pagC Virulence membrane protein PagC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P16454 2.3e-05 46 24 4 152 1 ail Attachment invasion locus protein Yersinia enterocolitica

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06595
Feature type CDS
Gene -
Product outer membrane beta-barrel protein
Location 1444423 - 1444983 (strand: 1)
Length 561 (nucleotides) / 186 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3738
Orthogroup size 3
N. genomes 1

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Genomic region

Domains

PF13505 Outer membrane protein beta-barrel domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3637 Cell wall/membrane/envelope biogenesis (M) M Opacity protein LomR and related surface antigens

Protein Sequence

MKKNLILFISFILPFSPSLHAFENNQAIYGGYIYGKIKNHKANGAIISYHYGSDIHWGMLLSLLHIKSTHQSHFIDASSLKLGTKDEHAKVSALLIGPTYRITPSLAIYAQMGPKKLKYRVDKSYSGVAVTDTIIVDTTNVMFQAGIDYSLRKNVGINLGYLHSDTESNKHNIRLNSIQLSLGYRF

Flanking regions ( +/- flanking 50bp)

TATTAACTCACTAAAAATATCGCCATCTCCAACAAATTAGATACGCGATAATGAAAAAAAATCTTATTTTATTTATAAGCTTTATTTTACCTTTCTCTCCATCACTACATGCTTTTGAGAATAATCAGGCAATTTATGGCGGTTACATATATGGAAAAATAAAAAACCACAAAGCAAATGGTGCAATAATAAGTTATCACTATGGATCCGATATTCACTGGGGAATGTTACTTTCATTACTGCATATCAAGTCAACACATCAAAGCCATTTTATAGACGCTAGCTCACTTAAGCTAGGCACAAAAGATGAACATGCAAAGGTTTCTGCATTATTAATAGGCCCAACGTATCGAATTACACCTTCTTTGGCTATCTACGCCCAAATGGGGCCTAAAAAATTAAAATATCGAGTTGATAAAAGTTATTCAGGCGTTGCGGTAACCGATACCATTATCGTCGACACCACCAATGTGATGTTTCAAGCGGGTATTGATTATAGCCTTAGAAAAAATGTAGGCATTAATCTTGGCTATTTACATTCAGATACTGAGTCAAACAAACATAATATTAGACTAAATAGTATCCAATTATCCTTAGGCTATCGTTTTTAATGTTTTATAAATATGCGATAACATAAGTTAAAAATAATCTTATCAATTTT