COG3550


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3550, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Serine/threonine protein kinase HipA, toxin component of the HipAB toxin-antitoxin module
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG3550 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3687 F4V73_RS00970 205001 206296 1 type II toxin-antitoxin system HipA family toxin Morganella psychrotolerans
1 group_3687 F4V73_RS05850 1245028 1246302 -1 type II toxin-antitoxin system HipA family toxin Morganella psychrotolerans
2 group_3687 F4V73_RS10090 125552 126829 1 HipA domain-containing protein Morganella psychrotolerans
3 group_3849 F4V73_RS10150 141153 142502 -1 type II toxin-antitoxin system HipA family toxin Morganella psychrotolerans
4 group_3687 PMI_RS00265 82844 84130 -1 type II toxin-antitoxin system HipA family toxin Proteus mirabilis HI4320
5 group_3849 PMI_RS15470 3439488 3440801 -1 type II toxin-antitoxin system HipA family toxin Proteus mirabilis HI4320