COG3451


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3451, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type IV secretory pathway, VirB4 component
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG3451 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_118 FBDBKF_03965 191361 194228 -1 virB4 conjugative transfer ATPase Morganella morganii S1
1 group_118 FBDBKF_16795 37129 39825 -1 conjugative transfer ATPase Morganella morganii S1
2 group_118 EHELCC_06570 52875 55742 1 virB4 conjugative transfer ATPase Morganella morganii S2
3 group_118 EHELCC_10665 173946 176642 1 conjugative transfer ATPase Morganella morganii S2
4 group_118 NLDBIP_06895 52748 55615 1 virB4 conjugative transfer ATPase Morganella morganii S4
5 group_118 NLDBIP_11010 152217 154913 1 conjugative transfer ATPase Morganella morganii S4
6 group_118 LHKJJB_06430 16494 19361 1 virB4 conjugative transfer ATPase Morganella morganii S3
7 group_118 LHKJJB_10345 36615 39311 -1 conjugative transfer ATPase Morganella morganii S3
8 group_118 HKOGLL_04500 214026 216893 -1 virB4 conjugative transfer ATPase Morganella morganii S5
9 group_118 HKOGLL_16510 36624 39320 -1 conjugative transfer ATPase Morganella morganii S5
10 group_3906 PMI_RS12165 2689243 2691642 -1 traC type IV secretion system protein TraC Proteus mirabilis HI4320
11 group_118 PMI_RS12720 2814285 2817152 -1 conjugative transfer ATPase Proteus mirabilis HI4320
12 group_3906 PMI_RS18555 3610 6384 1 VirB3 family type IV secretion system protein Proteus mirabilis HI4320