Homologs in group_3906

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS12165 PMI_RS12165 29.1 Proteus mirabilis HI4320 traC type IV secretion system protein TraC

Distribution of the homologs in the orthogroup group_3906

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3906

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9RPY1 5.32e-148 461 33 13 828 2 virB4 Type IV secretion system protein virB4 Brucella suis biovar 1 (strain 1330)
Q8YDZ4 7.97e-148 461 33 13 828 3 virB4 Type IV secretion system protein virB4 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P0C525 2.76e-147 459 33 13 828 3 virB4 Type IV secretion system protein virB4 Brucella abortus biovar 1 (strain 9-941)
Q2YIT8 2.76e-147 459 33 13 828 3 virB4 Type IV secretion system protein virB4 Brucella abortus (strain 2308)
Q7WDU1 2.37e-131 417 31 10 819 3 ptlC Type IV secretion system protein PtlC homolog Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q7W2U3 3.97e-131 417 31 10 819 3 ptlC Type IV secretion system protein PtlC homolog Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
Q7VSX9 2.94e-130 415 31 10 823 1 ptlC Type IV secretion system protein PtlC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q6FYW7 5.74e-109 357 29 14 817 3 virB4 Type IV secretion system protein virB4 Bartonella quintana (strain Toulouse)
Q9R2W4 7.41e-108 354 29 13 815 1 virB4 Type IV secretion system protein virB4 Bartonella henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 1)
P0A3W0 1.15e-87 300 26 13 785 1 virB4 Protein virB4 Rhizobium radiobacter
P0A3W1 1.15e-87 300 26 13 785 3 virB4 Protein virB4 Agrobacterium tumefaciens (strain 15955)
P17794 4.65e-86 296 25 14 814 3 virB4 Protein virB4 Agrobacterium fabrum (strain C58 / ATCC 33970)
Q9ZLT4 2.25e-77 275 28 27 833 3 cagE Type IV secretion system protein CagE Helicobacter pylori (strain J99 / ATCC 700824)
Q48252 8.45e-76 271 28 28 834 1 cagE Type IV secretion system protein CagE Helicobacter pylori (strain ATCC 700392 / 26695)
P55399 2.32e-24 112 21 19 614 3 trbEB Probable conjugal transfer protein TrbE part 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P54910 3e-17 90 19 25 800 3 trbE Conjugal transfer protein TrbE Rhizobium radiobacter

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18555
Feature type CDS
Gene -
Product VirB3 family type IV secretion system protein
Location 3610 - 6384 (strand: 1)
Length 2775 (nucleotides) / 924 (amino acids)

Contig

Accession NC_010555
Length 36289 nucleotides
Topology circular
Plasmid True

Orthology

Orthogroup group_3906
Orthogroup size 2
N. genomes 1

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Genomic region

Domains

PF03135 CagE, TrbE, VirB family, component of type IV transporter system
PF05101 Type IV secretory pathway, VirB3-like protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3451 Intracellular trafficking, secretion, and vesicular transport (U) U Type IV secretory pathway, VirB4 component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03199 type IV secretion system protein VirB4 [EC:7.4.2.8] Bacterial secretion system -

Protein Sequence

MSVVFKGLTRPALIRGLGVPLYPFLFMIMVVVVIAANTSDYMYFLIPVGWFLIKKMTEIDDRVFDLLYLRYRVSGHPVSNQKYDAVHYSGNTYDKVDISKLEKMMKLNHQTPIEDMIPFSTHITDKLVCTRKQDLIATWEIDGAYFECQAEDELDRLTDRLNTLIRSFEDKAVTFYTHRIRTKSKIEKNFRSLVPFANRVMNDYYDSLSQECFYKNRLFISLCYKPLTADEKLTFLFSKNKKEKEKQNKKILTESIAVMNDMTGRLDNYLEQFNATRLGVYEEKNRVFSSQLSLFQYLLTGKWQKIAITNSPFYNSLGGKDVFFGSDSGQLSAGSDARYFRIIEIKDYFQHTESGIFDALMYVPVEYIMTSSFTILRKKESTKRLDDQLDKLVIANDAAVTQQNQLIVGTDMLASGLIAFGNASFSLLVYADSPEELIKNSNMVANILQDLGLVVTYSGLSLGAAYFAQLPANYTLRPRLSMISSLNFVEMESFHNFFSGKEKNNSWGDALITLKGSGNDVYHMNYHMTREGVNDFGKNPPLAHTEILGASGGGKTVLMMAHALAAQQYGMADSFPDNRKIKKLTTVFFDKDRAGEVAIRAMGGEYFKIKSGEPTGWNPFQLAPTKRNIAFLKELVRILCTVNGGELDDHQLQLISDAVERLMQRDNRTYGISKLIPLIMEDRDGTTLKTGLKVRLNAWAKDGEFGWVFDNENETFDINEKSVFGVDGTEFLDDKVTSQVIPFYLIYKVASLADGRRLLIYMDEFHQWLVNESMQKSIYNILKTGRKLDMVLVFATQSPDELIKTPIAAAVREQCATHIYLSNPKATREDYVNGLQVSELYFDIIKNIDPLSRMHLVVKNPQRKGDKTEFAAFAKLDLGQAAKYLPILSASSDQMVIFDEIYQEGMKPEEWIDVYLNQVNKISH

Flanking regions ( +/- flanking 50bp)

TTGCCCCTTACGTGAAAGACTGGCTGTAATTTAAAAATGAGGGCGGATTTATGAGTGTTGTTTTTAAAGGATTAACCCGCCCCGCTTTAATTCGGGGCTTAGGTGTACCGCTGTACCCGTTTTTATTCATGATTATGGTGGTCGTCGTTATCGCAGCAAACACAAGCGATTATATGTATTTTTTAATTCCGGTCGGTTGGTTCTTGATTAAAAAAATGACGGAAATTGATGATCGGGTGTTTGATTTGTTGTATTTGCGTTATCGAGTGAGTGGTCATCCAGTCAGTAATCAGAAATATGATGCTGTACACTATTCAGGAAACACATACGATAAGGTCGATATATCAAAACTGGAAAAAATGATGAAACTAAATCACCAAACCCCGATTGAAGATATGATCCCATTTTCTACACATATAACAGATAAGTTGGTATGCACTCGTAAGCAGGATTTAATTGCTACTTGGGAAATTGACGGGGCTTATTTTGAATGTCAGGCTGAGGATGAGCTAGATCGTTTAACAGATCGTTTGAATACGCTCATTCGTAGTTTTGAGGATAAAGCTGTAACTTTTTATACTCACCGGATAAGAACGAAAAGTAAAATAGAAAAGAACTTCCGTTCTCTTGTCCCTTTTGCTAACAGAGTAATGAATGATTACTATGACTCTTTAAGTCAGGAATGTTTTTATAAAAATCGTCTTTTTATCTCTTTATGTTATAAGCCGTTAACGGCAGATGAGAAGTTAACGTTTCTTTTTTCCAAAAATAAAAAAGAGAAAGAAAAACAAAACAAAAAAATATTAACAGAATCGATAGCTGTCATGAATGATATGACAGGAAGATTAGATAACTATCTTGAGCAGTTTAATGCAACTCGTTTAGGTGTGTATGAAGAAAAAAACAGAGTGTTTTCTTCTCAGCTATCTTTATTCCAGTATCTTTTAACAGGGAAATGGCAAAAAATAGCCATCACTAATAGCCCATTTTATAATTCATTGGGTGGGAAAGATGTTTTCTTCGGTAGTGATTCAGGTCAGTTATCCGCCGGAAGTGATGCGCGTTATTTCCGTATTATTGAGATAAAGGATTATTTTCAACATACCGAATCCGGTATTTTTGATGCGCTGATGTATGTTCCTGTGGAATATATTATGACCAGTAGCTTTACCATTTTAAGGAAAAAAGAATCAACAAAAAGATTAGATGATCAGTTAGATAAATTGGTTATTGCTAATGATGCAGCAGTCACACAACAAAATCAGCTTATTGTGGGAACTGATATGTTAGCCAGTGGATTGATTGCATTTGGTAATGCCAGTTTTTCATTGTTAGTTTATGCGGATTCACCGGAAGAATTAATAAAAAATAGCAATATGGTTGCAAATATCTTACAGGATTTAGGATTGGTTGTGACATATTCAGGTTTATCTTTAGGAGCGGCTTATTTTGCTCAGTTACCTGCTAATTATACACTGCGTCCTCGCCTGTCGATGATAAGTAGCCTGAATTTTGTGGAAATGGAATCATTTCATAATTTCTTTTCAGGAAAAGAAAAAAATAACTCATGGGGCGATGCGTTAATCACTCTTAAAGGATCAGGTAATGATGTGTACCACATGAATTACCACATGACCCGTGAGGGTGTTAATGATTTTGGTAAGAACCCGCCGCTGGCTCATACTGAGATATTAGGCGCATCAGGGGGAGGGAAAACGGTCTTGATGATGGCTCATGCGTTAGCTGCACAACAATATGGAATGGCTGATTCATTTCCTGATAACCGGAAAATAAAAAAACTAACCACTGTTTTTTTTGATAAAGACCGTGCGGGAGAAGTAGCCATAAGAGCTATGGGCGGTGAATATTTTAAAATTAAAAGTGGTGAACCTACAGGCTGGAATCCATTTCAGTTAGCCCCGACAAAACGCAACATTGCCTTTTTAAAAGAACTGGTAAGAATTTTGTGTACTGTAAATGGCGGAGAACTGGACGATCATCAATTACAGTTAATTTCAGATGCTGTAGAACGCTTAATGCAACGGGATAACCGTACATATGGTATCAGTAAACTAATTCCTTTAATTATGGAGGACAGAGACGGAACAACGTTAAAAACGGGATTAAAAGTCCGGCTGAATGCATGGGCGAAAGATGGGGAGTTTGGTTGGGTATTCGATAATGAAAATGAAACTTTTGATATAAATGAGAAATCTGTATTTGGGGTAGACGGCACGGAATTTTTAGACGACAAAGTCACCTCACAGGTGATCCCATTCTACCTTATTTATAAGGTTGCATCATTAGCCGATGGTCGTCGCCTGTTAATATATATGGATGAGTTTCATCAGTGGCTTGTTAATGAAAGTATGCAAAAAAGTATTTATAACATACTGAAAACAGGTAGGAAACTGGATATGGTGCTTGTTTTTGCTACTCAATCACCTGATGAACTTATTAAAACGCCAATAGCTGCCGCTGTCAGGGAACAATGTGCCACACATATTTATTTGTCTAACCCTAAAGCTACCCGTGAGGATTACGTTAACGGCTTACAGGTCAGTGAATTGTATTTTGACATTATTAAAAATATTGACCCGCTTTCCCGTATGCACTTAGTGGTCAAAAACCCACAACGCAAAGGCGATAAAACTGAGTTTGCTGCATTTGCAAAACTCGATTTAGGTCAGGCAGCAAAATATTTACCAATATTAAGTGCATCCAGTGATCAGATGGTGATTTTTGATGAAATTTATCAAGAGGGCATGAAACCGGAAGAATGGATTGATGTGTACTTAAATCAGGTCAATAAAATATCACATTAAGGGGCTGGAAGATGAAAAAAACAGTATTTCCGTTATTTGTTGCTCTGTCA