COG3028


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3028, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal 50S subunit-associated protein YjgA, DUF615 family
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG3028 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_742 FBDBKF_03300 60020 60568 1 yjgA ribosome biogenesis factor YjgA Morganella morganii S1
1 group_742 EHELCC_07235 186535 187083 -1 yjgA ribosome biogenesis factor YjgA Morganella morganii S2
2 group_742 NLDBIP_07560 186408 186956 -1 yjgA ribosome biogenesis factor YjgA Morganella morganii S4
3 group_742 LHKJJB_07095 150154 150702 -1 yjgA ribosome biogenesis factor YjgA Morganella morganii S3
4 group_742 HKOGLL_03835 82685 83233 1 yjgA ribosome biogenesis factor YjgA Morganella morganii S5
5 group_742 F4V73_RS11635 479418 479966 -1 yjgA ribosome biogenesis factor YjgA Morganella psychrotolerans
6 group_742 PMI_RS18115 3980378 3980938 -1 yjgA ribosome biogenesis factor YjgA Proteus mirabilis HI4320