Homologs in group_1345

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07825 FBDBKF_07825 100.0 Morganella morganii S1 rarD EamA family transporter RarD
EHELCC_13655 EHELCC_13655 100.0 Morganella morganii S2 rarD EamA family transporter RarD
LHKJJB_08750 LHKJJB_08750 100.0 Morganella morganii S3 rarD EamA family transporter RarD
HKOGLL_08300 HKOGLL_08300 100.0 Morganella morganii S5 rarD EamA family transporter RarD
F4V73_RS13220 F4V73_RS13220 89.4 Morganella psychrotolerans rarD EamA family transporter RarD
PMI_RS10780 PMI_RS10780 68.8 Proteus mirabilis HI4320 rarD EamA family transporter RarD

Distribution of the homologs in the orthogroup group_1345

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1345

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9KVF1 7.19e-55 183 36 3 293 3 VC_0195 Uncharacterized transporter VC_0195 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P27844 9.26e-55 182 35 1 291 1 rarD Protein RarD Escherichia coli (strain K12)
Q8Z3B1 1.06e-54 182 36 0 288 3 rarD Protein RarD Salmonella typhi
Q9L6P1 2e-54 181 36 0 288 3 rarD Protein RarD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O31859 4.35e-47 162 33 5 299 3 yojE Uncharacterized transporter YojE Bacillus subtilis (strain 168)
Q9I633 4.38e-44 155 33 0 275 3 PA0485 Uncharacterized transporter PA0485 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P83936 7.87e-43 152 31 0 291 3 rarD Protein RarD Streptomyces exfoliatus
O68827 7.08e-12 68 25 2 179 3 rarD Chloramphenicol-sensitive protein RarD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q57389 3.13e-10 63 24 5 294 3 HI_0680 Uncharacterized transporter HI_0680 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9CLF4 1.01e-06 52 23 6 265 3 PM1281 Uncharacterized transporter PM1281 Pasteurella multocida (strain Pm70)
P44579 4.63e-06 50 24 4 185 3 HI_0223 Uncharacterized transporter HI_0223 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_14100
Feature type CDS
Gene rarD
Product EamA family transporter RarD
Location 86462 - 87370 (strand: 1)
Length 909 (nucleotides) / 302 (amino acids)
In genomic island -

Contig

Accession ZDB_529
Length 159829 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1345
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00892 EamA-like transporter family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2962 General function prediction only (R) R Membrane protein RarD, contains two EamA domains, drug/metabolite transporter family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05786 chloramphenicol-sensitive protein RarD - -

Protein Sequence

MFLRSGAMLAIFSYFLWGITPLFYRLLPGVQPLELLSQRVLWSIPLLLFVRFFLKNRTRVKAVWADKRSLLLCLLSTSVMAISWCTFTYSMTHDLVLEASMGYFITPLFSILLGVIFLHERLKPAEKTALIFVCAGVGYQLYQYGSLPKLALMMGSAFALYGFIRKFIRYDLTTSLLIESLWLLPVAIVLYFWLENSGAGTFSTADTFTRICFILTAPVTLLPLLFFTAAVRSTTLTTIGLAQYLEPTIQFLLAVFLFNEHFDAVKGVSFSLIWLGLLFCILSLIRHHWKNTAKAGLGIKPR

Flanking regions ( +/- flanking 50bp)

CAGGGGGGTATGATAGTCATAACATAATGATAAACAGGATTGGCTGAACCATGTTTTTACGATCCGGCGCGATGCTGGCGATTTTTTCTTATTTTCTCTGGGGGATCACACCGCTTTTTTACCGCCTGCTGCCGGGGGTGCAGCCGCTGGAGTTATTATCCCAGCGCGTCCTCTGGTCAATTCCGCTGTTATTATTTGTCCGTTTCTTTTTAAAAAACCGTACCCGGGTAAAAGCGGTATGGGCTGATAAACGCTCGCTGCTGCTTTGTCTGCTCAGTACCAGTGTGATGGCAATATCCTGGTGCACCTTTACCTATTCAATGACCCATGATTTGGTGCTGGAAGCCAGCATGGGATATTTCATCACCCCCTTGTTTTCTATTTTACTGGGTGTCATCTTCCTGCATGAACGCCTGAAACCGGCAGAAAAAACCGCGCTGATTTTCGTCTGTGCCGGGGTGGGTTATCAGCTTTATCAGTACGGCAGCCTGCCGAAACTGGCGCTGATGATGGGCTCTGCGTTTGCACTGTACGGCTTTATCCGCAAATTTATCCGTTATGACCTGACGACTTCACTGCTGATTGAGAGTCTCTGGCTGCTGCCGGTGGCTATTGTGTTGTATTTCTGGCTTGAAAACAGCGGAGCGGGCACATTCAGCACCGCAGATACCTTTACCCGCATCTGTTTTATACTGACCGCGCCTGTTACGCTGCTGCCGCTGCTGTTCTTCACGGCTGCAGTGCGTTCCACCACACTGACCACCATCGGTCTGGCACAGTATCTCGAACCGACCATTCAGTTCCTGCTGGCGGTGTTCCTCTTTAATGAGCATTTTGATGCTGTCAAAGGCGTCAGTTTCTCATTGATCTGGCTGGGATTGTTGTTCTGTATCCTGTCTCTTATCCGCCATCACTGGAAAAATACAGCAAAAGCCGGTCTGGGCATAAAACCCCGCTGAGCGCTGTGACAGCCGGTGATTTGCTTATTTCGTGACTAAAGCAAACGATT