COG2378
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2378, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 14 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description |
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains |
Function(s) descr. |
Transcription (K) |
Occurence in the database
COG2378 is associated with 14 different proteins (see tab "Protein list" and "Profile") |
The 14 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_2199 |
FBDBKF_16640 |
12405 |
13079 |
1 |
|
Putative DNA-binding transcriptional regulator |
Morganella morganii S1 |
1 |
group_2199 |
FBDBKF_17995 |
126 |
395 |
1 |
|
hypothetical protein |
Morganella morganii S1 |
2 |
group_3029 |
FBDBKF_18060 |
13461 |
14159 |
-1 |
yobV |
putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains |
Morganella morganii S1 |
3 |
group_2199 |
EHELCC_16695 |
126 |
395 |
1 |
|
hypothetical protein |
Morganella morganii S2 |
4 |
group_3029 |
EHELCC_16760 |
13461 |
14159 |
-1 |
yobV |
putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains |
Morganella morganii S2 |
5 |
group_3029 |
NLDBIP_17690 |
41607 |
42305 |
1 |
yobV |
putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains |
Morganella morganii S4 |
6 |
group_2199 |
NLDBIP_17755 |
55371 |
55640 |
-1 |
|
hypothetical protein |
Morganella morganii S4 |
7 |
group_3029 |
LHKJJB_17610 |
41607 |
42305 |
1 |
yobV |
putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains |
Morganella morganii S3 |
8 |
group_2199 |
LHKJJB_17675 |
55371 |
55640 |
-1 |
|
hypothetical protein |
Morganella morganii S3 |
9 |
group_3029 |
HKOGLL_17425 |
41607 |
42305 |
1 |
yobV |
putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains |
Morganella morganii S5 |
10 |
group_2199 |
HKOGLL_17490 |
55371 |
55640 |
-1 |
|
hypothetical protein |
Morganella morganii S5 |
11 |
group_3029 |
F4V73_RS10210 |
152388 |
153083 |
-1 |
|
YafY family protein |
Morganella psychrotolerans |
12 |
group_4590 |
PMI_RS12265 |
2721596 |
2722519 |
-1 |
|
WYL domain-containing protein |
Proteus mirabilis HI4320 |
13 |
group_2199 |
PMI_RS17360 |
3811220 |
3811927 |
1 |
|
WYL domain-containing protein |
Proteus mirabilis HI4320 |