COG2378


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2378, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
Function(s) descr. Transcription (K)

Occurence in the database

COG2378 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2199 FBDBKF_16640 12405 13079 1 Putative DNA-binding transcriptional regulator Morganella morganii S1
1 group_2199 FBDBKF_17995 126 395 1 hypothetical protein Morganella morganii S1
2 group_3029 FBDBKF_18060 13461 14159 -1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains Morganella morganii S1
3 group_2199 EHELCC_16695 126 395 1 hypothetical protein Morganella morganii S2
4 group_3029 EHELCC_16760 13461 14159 -1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains Morganella morganii S2
5 group_3029 NLDBIP_17690 41607 42305 1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains Morganella morganii S4
6 group_2199 NLDBIP_17755 55371 55640 -1 hypothetical protein Morganella morganii S4
7 group_3029 LHKJJB_17610 41607 42305 1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains Morganella morganii S3
8 group_2199 LHKJJB_17675 55371 55640 -1 hypothetical protein Morganella morganii S3
9 group_3029 HKOGLL_17425 41607 42305 1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains Morganella morganii S5
10 group_2199 HKOGLL_17490 55371 55640 -1 hypothetical protein Morganella morganii S5
11 group_3029 F4V73_RS10210 152388 153083 -1 YafY family protein Morganella psychrotolerans
12 group_4590 PMI_RS12265 2721596 2722519 -1 WYL domain-containing protein Proteus mirabilis HI4320
13 group_2199 PMI_RS17360 3811220 3811927 1 WYL domain-containing protein Proteus mirabilis HI4320