Homologs in group_2234

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17995 FBDBKF_17995 98.8 Morganella morganii S1 - hypothetical protein
EHELCC_16695 EHELCC_16695 98.8 Morganella morganii S2 - hypothetical protein
NLDBIP_17755 NLDBIP_17755 98.8 Morganella morganii S4 - hypothetical protein
LHKJJB_17675 LHKJJB_17675 98.8 Morganella morganii S3 - hypothetical protein
HKOGLL_17490 HKOGLL_17490 98.8 Morganella morganii S5 - hypothetical protein
PMI_RS17360 PMI_RS17360 37.2 Proteus mirabilis HI4320 - WYL domain-containing protein

Distribution of the homologs in the orthogroup group_2234

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2234

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P52133 1.86e-47 159 42 4 226 4 yfjR Uncharacterized HTH-type transcriptional regulator YfjR Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_16640
Feature type CDS
Gene -
Product Putative DNA-binding transcriptional regulator
Location 12405 - 13079 (strand: 1)
Length 675 (nucleotides) / 224 (amino acids)
In genomic island -

Contig

Accession contig_25
Length 47933 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2234
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF13280 WYL domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2378 Transcription (K) K Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains

Protein Sequence

MHTSDSRHDRLAFRLAMIISRLFRGETLYPAQLAREFNVSARTLQRDFSERLVFLDTEPYQGGYRLAAGQRPYRTDSDILYFADITHITPLFPSLDRRLLSVLLSPENGAPCLVYHEPPQSAPTLFGGFYVVTQAIVRRRLLSFRCDGQDYEGMAPYKLIYFQRDWYLCGEWQSALRVFRFSQLQNIAVSGRRFRQDAVIARTVTRPEFITALPHYQFIRSLIT

Flanking regions ( +/- flanking 50bp)

CGTATTCCCTTATTCCCTTTTTATCTGACTGACTCACGGAGGCTGCGCTCATGCATACGTCAGATTCACGCCATGACCGGCTTGCGTTCCGGCTGGCCATGATTATCAGCCGCCTGTTCCGCGGCGAAACACTGTATCCGGCACAGCTCGCCCGTGAGTTTAATGTCTCGGCCCGCACACTGCAGCGGGATTTCAGTGAGCGCCTGGTCTTTCTGGACACTGAGCCGTATCAGGGCGGATACCGGCTGGCCGCCGGTCAGCGCCCGTACCGGACAGACAGCGATATCCTGTACTTTGCCGATATCACCCATATCACCCCGCTGTTTCCCTCGCTTGACCGCAGGCTGCTGTCCGTACTGCTCAGTCCGGAAAACGGTGCCCCCTGTCTGGTCTACCATGAACCGCCGCAATCCGCCCCGACGCTGTTCGGCGGCTTTTATGTGGTGACACAGGCGATTGTCCGCAGGCGTCTGCTCAGCTTCCGCTGTGACGGTCAGGACTATGAGGGCATGGCCCCCTACAAGCTGATTTATTTTCAGCGGGACTGGTATCTGTGCGGGGAATGGCAGTCTGCCCTGCGGGTGTTCCGGTTCAGTCAGCTGCAGAACATTGCCGTGTCCGGACGCCGTTTCCGTCAGGATGCGGTTATCGCACGGACAGTCACCCGGCCCGAATTTATTACCGCATTACCCCATTATCAGTTTATTCGTTCATTAATCACATAAAAGGAACATCATATGATGAAAACCCGGTTCACCGCCGTTCTGCTGTCTGC