Homologs in group_4590

Help

0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4590

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_4590

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DX76 1.88e-37 138 31 6 277 1 capW DNA-binding transcriptional repressor CapW Escherichia coli
P0DX70 1.88e-37 138 31 6 277 1 capW DNA-binding transcriptional repressor CapW Escherichia coli (strain KTE188)
P0DX74 5.7e-30 118 33 6 241 1 capW DNA-binding transcriptional repressor CapW Pseudomonas aeruginosa
A0A8X6EH27 1.44e-23 101 30 6 259 1 capW DNA-binding transcriptional repressor CapW Stenotrophomonas maltophilia
O34920 8.68e-05 47 33 5 102 4 yobV Uncharacterized HTH-type transcriptional regulator YobV Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12265
Feature type CDS
Gene -
Product WYL domain-containing protein
Location 2721596 - 2722519 (strand: -1)
Length 924 (nucleotides) / 307 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4590
Orthogroup size 1
N. genomes 1

Actions

Genomic region

Domains

PF13280 WYL domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2378 Transcription (K) K Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains

Protein Sequence

MTNDGLKQTVVAKPDRLLQIAQLPQATRDRIAHIDFTLLFKGEAVRADLVDRFSIAAAQATKDFTMYRELAPGNIEYDQKLKLHKRGEAFEPLFEYDVVRTLATISQGYGDGFTGKVKPPLACEAPYHLNKPSLSIVAKVTEAIHKGKALSITYVSLSSGETTREIVPHTLVDNGLRWHVRGFDRKHGEFRDFVLTRIKAAAVLEDSTLSEAELETQDRQWNRFVELELVPHPRIEHSEAIELDYGMTGGVLKVEIRAASAGYLLRQWNVDCSTNATLKDGGAQLYLKNRATLYGVKNIMLAPGITS

Flanking regions ( +/- flanking 50bp)

CTTTATAAACAGAGTTTTAAGAATCTGGTTGAATTGGATAAACAAGACGCATGACAAATGATGGTCTGAAACAAACAGTAGTGGCGAAGCCAGATAGGCTTTTGCAGATAGCGCAGTTGCCACAAGCAACCAGGGATCGCATTGCCCACATCGATTTCACTTTATTGTTTAAGGGCGAAGCGGTGCGAGCTGATTTAGTCGATCGCTTCAGCATAGCCGCTGCACAAGCAACGAAAGACTTCACAATGTATCGAGAGCTTGCGCCAGGCAACATTGAGTATGACCAAAAGCTCAAATTACATAAGCGTGGTGAAGCTTTTGAGCCCCTGTTCGAGTACGACGTTGTGAGAACTCTGGCAACCATTAGCCAAGGATACGGAGATGGCTTCACTGGCAAGGTAAAACCACCATTGGCTTGTGAAGCGCCTTATCACCTTAACAAGCCGAGTTTATCGATAGTGGCGAAGGTCACCGAGGCCATACACAAAGGCAAAGCCTTGAGTATCACCTATGTGTCGTTATCGAGTGGTGAAACAACGCGTGAAATTGTTCCGCATACGCTGGTGGACAATGGCCTGCGTTGGCATGTTCGTGGTTTTGACCGCAAGCATGGCGAGTTCCGTGACTTTGTGCTGACCCGAATTAAAGCAGCGGCTGTGCTTGAAGACTCCACGCTGTCTGAAGCCGAACTTGAAACCCAAGACCGGCAATGGAACAGATTTGTTGAACTTGAGTTAGTGCCGCACCCACGTATTGAGCACAGCGAAGCGATTGAGCTGGATTATGGCATGACGGGGGGCGTTCTAAAGGTTGAGATTAGAGCGGCATCGGCAGGCTACTTACTCAGACAATGGAATGTGGATTGTTCTACCAACGCCACACTCAAAGATGGTGGAGCTCAATTGTATTTAAAGAACAGAGCAACACTTTATGGAGTTAAAAACATCATGCTAGCTCCGGGAATTACAAGTTAGTCGGTGAGTAAATCATTGATTCTTAGATGACTGCCTATGAGGTCACAGGT