COG2333


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2333, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG2333 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1231 FBDBKF_07170 106623 108923 1 comEC DNA internalization-related competence protein ComEC/Rec2 Morganella morganii S1
1 group_1231 EHELCC_03800 77263 79563 -1 comEC DNA internalization-related competence protein ComEC/Rec2 Morganella morganii S2
2 group_1231 NLDBIP_03800 77059 79359 -1 comEC DNA internalization-related competence protein ComEC/Rec2 Morganella morganii S4
3 group_1231 LHKJJB_09630 77173 79473 -1 comEC DNA internalization-related competence protein ComEC/Rec2 Morganella morganii S3
4 group_1231 HKOGLL_09345 111579 113879 1 comEC DNA internalization-related competence protein ComEC/Rec2 Morganella morganii S5
5 group_1231 F4V73_RS01355 294766 297093 1 DNA internalization-related competence protein ComEC/Rec2 Morganella psychrotolerans
6 group_1231 PMI_RS03525 786165 788534 1 DNA internalization-related competence protein ComEC/Rec2 Proteus mirabilis HI4320