COG2011


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2011, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type methionine transport system, permease component
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG2011 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1042 FBDBKF_05890 2053 2706 1 metP ABC-type methionine transport system, permease component Morganella morganii S1
1 group_1042 EHELCC_08935 2625 3278 1 metP ABC-type methionine transport system, permease component Morganella morganii S2
2 group_1042 NLDBIP_09315 2625 3278 1 metP ABC-type methionine transport system, permease component Morganella morganii S4
3 group_1042 LHKJJB_08440 213960 214613 -1 metP ABC-type methionine transport system, permease component Morganella morganii S3
4 group_1042 HKOGLL_07990 213960 214613 -1 metP ABC-type methionine transport system, permease component Morganella morganii S5
5 group_1042 F4V73_RS16005 210748 211401 -1 methionine ABC transporter permease MetI Morganella psychrotolerans
6 group_1042 PMI_RS11160 2456239 2456892 1 methionine ABC transporter permease MetI Proteus mirabilis HI4320