COG1512


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1512, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized membrane protein YgcG, contains a TPM-fold domain
Function(s) descr. Function unknown (S)

Occurence in the database

COG1512 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2679 FBDBKF_05010 7453 8595 -1 ygcG Uncharacterized membrane protein YgcG, contains a TPM-fold domain Morganella morganii S1
1 group_2719 FBDBKF_07275 136239 137468 1 ygcG Uncharacterized membrane protein YgcG, contains a TPM-fold domain Morganella morganii S1
2 group_2719 EHELCC_03695 48718 49947 -1 ygcG Uncharacterized membrane protein YgcG, contains a TPM-fold domain Morganella morganii S2
3 group_2679 EHELCC_12580 172899 174041 1 ygcG Uncharacterized membrane protein YgcG, contains a TPM-fold domain Morganella morganii S2
4 group_2719 NLDBIP_03695 48514 49743 -1 ygcG Uncharacterized membrane protein YgcG, contains a TPM-fold domain Morganella morganii S4
5 group_2679 NLDBIP_12920 172854 173996 1 ygcG Uncharacterized membrane protein YgcG, contains a TPM-fold domain Morganella morganii S4
6 group_2719 LHKJJB_09525 48628 49857 -1 ygcG Uncharacterized membrane protein YgcG, contains a TPM-fold domain Morganella morganii S3
7 group_2679 LHKJJB_12780 172899 174041 1 ygcG Uncharacterized membrane protein YgcG, contains a TPM-fold domain Morganella morganii S3
8 group_2719 HKOGLL_09450 141195 142424 1 ygcG Uncharacterized membrane protein YgcG, contains a TPM-fold domain Morganella morganii S5
9 group_2679 HKOGLL_11395 172899 174041 1 ygcG Uncharacterized membrane protein YgcG, contains a TPM-fold domain Morganella morganii S5
10 group_2719 F4V73_RS01460 324443 325663 1 TPM domain-containing protein Morganella psychrotolerans
11 group_2679 PMI_RS13025 2886711 2887889 -1 TPM domain-containing protein Proteus mirabilis HI4320