COG1403


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1403, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 5-methylcytosine-specific restriction endonuclease McrA
Function(s) descr. Defense mechanisms (V)

Occurence in the database

COG1403 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3774 FBDBKF_19430 16338 16688 -1 mcrA 5-methylcytosine-specific restriction endonuclease McrA Morganella morganii S1
1 group_3815 F4V73_RS02300 484963 485310 1 yajD HNH nuclease YajD Morganella psychrotolerans
2 group_3876 PMI_RS01500 369084 369944 -1 HNH endonuclease Proteus mirabilis HI4320
3 group_3774 PMI_RS04520 1004547 1004885 1 HNH endonuclease Proteus mirabilis HI4320
4 group_3876 PMI_RS04645 1027739 1028602 1 hypothetical protein Proteus mirabilis HI4320
5 group_3815 PMI_RS14770 3276048 3276395 1 yajD HNH nuclease YajD Proteus mirabilis HI4320