Homologs in group_3815

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS14770 PMI_RS14770 89.6 Proteus mirabilis HI4320 yajD HNH nuclease YajD

Distribution of the homologs in the orthogroup group_3815

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3815

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAQ5 1.2e-79 232 92 0 115 3 yajD Putative HNH nuclease YajD Shigella flexneri
P0AAQ2 1.2e-79 232 92 0 115 3 yajD Putative HNH nuclease YajD Escherichia coli (strain K12)
P0AAQ3 1.2e-79 232 92 0 115 3 yajD Putative HNH nuclease YajD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAQ4 1.2e-79 232 92 0 115 3 yajD Putative HNH nuclease YajD Escherichia coli O157:H7
P0A1S8 2.99e-79 231 90 0 115 3 yajD Putative HNH nuclease YajD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1S9 2.99e-79 231 90 0 115 3 yajD Putative HNH nuclease YajD Salmonella typhi

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02300
Feature type CDS
Gene yajD
Product HNH nuclease YajD
Location 484963 - 485310 (strand: 1)
Length 348 (nucleotides) / 115 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3815
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF01844 HNH endonuclease

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1403 Defense mechanisms (V) V 5-methylcytosine-specific restriction endonuclease McrA

Protein Sequence

MALIPKNYARLESGYREKALKIYPWVCGRCTREFVYSNLRELTVHHIDHDHTNNPEDGSNWELLCLFCHDHEHSKYTEADLYGTRVVAGEDAQKDVGEATYNPFADLKSMLNKKK

Flanking regions ( +/- flanking 50bp)

TATTGGGGGCACTATCGTAAAACACTCTTTTTATAACAGGCAACATTGCAATGGCTCTTATCCCCAAAAACTACGCGCGGCTGGAAAGCGGCTACCGTGAGAAAGCCCTAAAAATCTATCCGTGGGTATGTGGACGCTGCACACGGGAGTTTGTTTATTCAAACCTGCGTGAATTAACCGTTCACCATATCGATCACGACCATACTAATAACCCGGAAGATGGCAGTAACTGGGAGTTGTTGTGTCTGTTTTGCCATGACCACGAACACTCGAAGTACACTGAAGCAGACCTGTACGGTACAAGAGTTGTCGCGGGAGAGGATGCGCAGAAAGATGTTGGTGAAGCGACCTATAATCCTTTTGCAGATTTAAAGTCGATGCTTAATAAGAAGAAATAATGTCAGCAACGACACCTCTGGTACAGGGCTGCTGAAGTAGCCCTGATCAT