COG1252


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1252, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description NADH dehydrogenase, FAD-containing subunit
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG1252 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1952 FBDBKF_14650 29434 30738 -1 ndh NADH dehydrogenase, FAD-containing subunit Morganella morganii S1
1 group_1952 EHELCC_15455 59510 60814 -1 ndh NADH dehydrogenase, FAD-containing subunit Morganella morganii S2
2 group_1952 NLDBIP_15985 59510 60814 -1 ndh NADH dehydrogenase, FAD-containing subunit Morganella morganii S4
3 group_1952 LHKJJB_15855 55872 57176 1 ndh NADH dehydrogenase, FAD-containing subunit Morganella morganii S3
4 group_1952 HKOGLL_14975 55084 56388 1 ndh NADH dehydrogenase, FAD-containing subunit Morganella morganii S5
5 group_1952 F4V73_RS07445 1558005 1559309 -1 NAD(P)/FAD-dependent oxidoreductase Morganella psychrotolerans
6 group_1952 PMI_RS04295 962466 963773 1 NAD(P)/FAD-dependent oxidoreductase Proteus mirabilis HI4320
7 group_2359 PMI_RS11115 2446149 2447342 -1 FAD/NAD(P)-binding oxidoreductase Proteus mirabilis HI4320