Orthogroup:group_2393


Homologs in group_2393

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19215 FBDBKF_19215 Morganella morganii S1 rpsC 30S ribosomal protein S3
EHELCC_18960 EHELCC_18960 Morganella morganii S2 rpsC 30S ribosomal protein S3
NLDBIP_18975 NLDBIP_18975 Morganella morganii S4 rpsC 30S ribosomal protein S3
LHKJJB_18830 LHKJJB_18830 Morganella morganii S3 rpsC 30S ribosomal protein S3
HKOGLL_18565 HKOGLL_18565 Morganella morganii S5 rpsC 30S ribosomal protein S3
F4V73_RS18950 F4V73_RS18950 Morganella psychrotolerans rpsC 30S ribosomal protein S3
PMI_RS16180 PMI_RS16180 Proteus mirabilis HI4320 rpsC 30S ribosomal protein S3

Distribution of group_2393 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2393 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2393

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2393.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpsC 7

Product

# Product Occurence
1 30S ribosomal protein S3 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0092 7 J Translation, ribosomal structure and biogenesis (J) Ribosomal protein S3

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02982 7 small subunit ribosomal protein S3 Ribosome -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00189 7 Ribosomal protein S3, C-terminal domain
PF07650 7 KH domain

Annotations of the 526 SwissProt hits

Annotation Number of occurrences
Small ribosomal subunit protein uS3 525
Small ribosomal subunit protein uS3 (Fragment) 1

Protein length

Unique protein length 233

Protein length distribution