COG1177


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1177, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type spermidine/putrescine transport system, permease component II
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG1177 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1466 FBDBKF_09405 110728 111510 -1 potC spermidine/putrescine ABC transporter permease PotC Morganella morganii S1
1 group_3006 FBDBKF_17655 27638 28438 -1 potC ABC-type spermidine/putrescine transport system, permease component II Morganella morganii S1
2 group_1466 EHELCC_10005 34594 35376 1 potC spermidine/putrescine ABC transporter permease PotC Morganella morganii S2
3 group_3006 EHELCC_18140 27014 27814 -1 potC ABC-type spermidine/putrescine transport system, permease component II Morganella morganii S2
4 group_1466 NLDBIP_10350 12865 13647 1 potC spermidine/putrescine ABC transporter permease PotC Morganella morganii S4
5 group_3006 NLDBIP_18010 10923 11723 1 potC ABC-type spermidine/putrescine transport system, permease component II Morganella morganii S4
6 group_1466 LHKJJB_11005 177881 178663 -1 potC spermidine/putrescine ABC transporter permease PotC Morganella morganii S3
7 group_3006 LHKJJB_18205 10923 11723 1 potC ABC-type spermidine/putrescine transport system, permease component II Morganella morganii S3
8 group_1466 HKOGLL_14065 111182 111964 -1 potC spermidine/putrescine ABC transporter permease PotC Morganella morganii S5
9 group_3006 HKOGLL_17995 27014 27814 -1 potC ABC-type spermidine/putrescine transport system, permease component II Morganella morganii S5
10 group_1466 F4V73_RS10560 243585 244367 1 potC spermidine/putrescine ABC transporter permease PotC Morganella psychrotolerans
11 group_3006 F4V73_RS15035 246292 247092 -1 ABC transporter permease Morganella psychrotolerans
12 group_1466 PMI_RS13480 2986226 2987005 -1 potC spermidine/putrescine ABC transporter permease PotC Proteus mirabilis HI4320