Homologs in group_2501

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01845 FBDBKF_01845 95.2 Morganella morganii S1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
EHELCC_02315 EHELCC_02315 95.2 Morganella morganii S2 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
NLDBIP_01145 NLDBIP_01145 95.2 Morganella morganii S4 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
LHKJJB_00890 LHKJJB_00890 95.2 Morganella morganii S3 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
HKOGLL_00930 HKOGLL_00930 95.2 Morganella morganii S5 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Distribution of the homologs in the orthogroup group_2501

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2501

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36948 1.36e-43 155 35 3 284 3 rbsC Ribose import permease protein RbsC Bacillus subtilis (strain 168)
P0AGI1 8.22e-37 137 33 4 314 1 rbsC Ribose import permease protein RbsC Escherichia coli (strain K12)
P0AGI2 8.22e-37 137 33 4 314 3 rbsC Ribose import permease protein RbsC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI3 8.22e-37 137 33 4 314 3 rbsC Ribose import permease protein RbsC Escherichia coli O157:H7
A7FMJ9 3.9e-36 135 35 4 272 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B2K3F9 4.97e-36 135 35 4 272 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
B1JLQ2 5.29e-36 135 35 4 272 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ1 5.29e-36 135 35 4 272 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TQL7 1.36e-35 134 35 4 272 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis (strain Pestoides F)
Q1CN17 1.36e-35 134 35 4 272 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R076 1.36e-35 134 35 4 272 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Angola)
Q7CG48 1.36e-35 134 35 4 272 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis
Q1C136 1.36e-35 134 35 4 272 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Antiqua)
A1JJ53 1.72e-35 134 33 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q5PJE5 3.58e-35 133 33 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8ZKQ2 4.32e-35 132 33 3 271 1 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG3 4.32e-35 132 33 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE1 4.32e-35 132 33 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella choleraesuis (strain SC-B67)
Q8Z2X7 1.81e-34 131 33 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhi
P44736 2.31e-33 128 33 6 273 3 rbsC Ribose import permease protein RbsC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q2PBM1 2.53e-31 122 32 4 279 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus temperata
Q7N2D7 8.05e-30 119 34 4 279 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
P32720 1.37e-28 115 27 2 297 1 alsC D-allose transport system permease protein AlsC Escherichia coli (strain K12)
Q2PBL8 3.77e-28 114 33 4 279 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus luminescens
A4WER2 2.19e-27 112 30 3 274 3 lsrD Autoinducer 2 import system permease protein LsrD Enterobacter sp. (strain 638)
P44885 4.53e-27 111 28 4 296 3 mglC Galactose/methyl galactoside import permease protein MglC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B1LFA0 4.63e-27 111 32 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain SMS-3-5 / SECEC)
P0AFS2 5.13e-27 111 32 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri
Q0T4L7 5.13e-27 111 32 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri serotype 5b (strain 8401)
P0AFS1 5.13e-27 111 32 3 271 1 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12)
B1IRU5 5.13e-27 111 32 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A068 5.13e-27 111 32 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O9:H4 (strain HS)
B1XEA3 5.13e-27 111 32 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12 / DH10B)
P0AE27 5.66e-27 111 29 2 301 3 araH L-arabinose transport system permease protein AraH Shigella flexneri
P0AE26 5.66e-27 111 29 2 301 2 araH L-arabinose transport system permease protein AraH Escherichia coli (strain K12)
Q8X504 6.55e-27 110 32 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O157:H7
A6TEB6 1.27e-22 99 33 3 271 3 lsrD Autoinducer 2 import system permease protein LsrD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B1JLQ1 5.34e-21 95 32 7 291 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ0 5.61e-21 95 32 7 291 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3G0 5.61e-21 95 32 7 291 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype IB (strain PB1/+)
P55569 9e-21 94 29 3 283 3 NGR_a02490 Probable ABC transporter permease protein y4mJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
A4TQL6 1.1e-20 94 32 7 291 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis (strain Pestoides F)
Q1CN16 1.1e-20 94 32 7 291 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Nepal516)
A9R075 1.1e-20 94 32 7 291 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Angola)
Q7CG49 1.1e-20 94 32 7 291 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis
Q1C137 1.1e-20 94 32 7 291 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Antiqua)
A7FMJ8 1.7e-20 93 32 7 291 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q2PBM2 1.83e-18 87 29 6 295 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
Q7N2D8 2.56e-18 87 29 6 295 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
P39328 4.91e-18 86 32 3 243 1 ytfT Galactofuranose transporter permease protein YtfT Escherichia coli (strain K12)
A1JJ54 1.6e-17 85 33 7 264 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q9F9B1 2.47e-17 84 28 5 280 1 frcC Fructose import permease protein FrcC Rhizobium meliloti
P77315 4.35e-17 84 28 6 298 3 yphD Probable ABC transporter permease protein YphD Escherichia coli (strain K12)
Q4J711 1.96e-16 82 27 7 320 1 xylH Xylose/arabinose import permease protein XylH Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q2PBL9 3.82e-16 81 28 6 295 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus luminescens
Q1JUP6 5.38e-16 80 25 3 286 3 araH L-arabinose ABC transporter permease protein AraH Azospirillum brasilense
P37772 6.61e-14 74 27 9 313 1 yjfF Inner membrane ABC transporter permease protein YjfF Escherichia coli (strain K12)
Q8G846 3.61e-13 72 26 5 271 1 fruF Fructose import permease protein FruF Bifidobacterium longum (strain NCC 2705)
Q56036 3.67e-13 72 29 7 336 1 mglC Galactose/methyl galactoside import permease protein MglC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8G845 4.73e-13 72 29 9 318 1 fruG Fructose import permease protein FruG Bifidobacterium longum (strain NCC 2705)
Q57321 4.96e-13 72 28 4 213 3 mglC Galactose/methyl galactoside import permease protein MglC Treponema pallidum (strain Nichols)
P0AGI7 6.37e-13 72 30 0 127 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI4 6.37e-13 72 30 0 127 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI5 6.37e-13 72 30 0 127 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI6 6.37e-13 72 30 0 127 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
B1LFA1 4.78e-12 69 29 4 263 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain SMS-3-5 / SECEC)
P23200 5.17e-12 69 29 8 336 1 mglC Galactose/methyl galactoside import permease protein MglC Escherichia coli (strain K12)
Q0T4L8 8e-12 68 30 4 263 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri serotype 5b (strain 8401)
P77672 8.95e-12 68 29 4 263 1 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12)
B1XEA2 8.95e-12 68 29 4 263 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12 / DH10B)
Q8XAY8 9.21e-12 68 29 4 263 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O157:H7
Q83RD8 1.61e-11 67 30 4 263 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri
B1IRU6 3.36e-11 66 29 4 263 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A067 3.36e-11 66 29 4 263 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O9:H4 (strain HS)
A4WER3 8.09e-11 65 32 3 174 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)
Q57HE2 2.04e-10 64 28 4 290 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella choleraesuis (strain SC-B67)
A9MZG2 2.13e-10 64 28 4 290 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q8ZKQ3 2.37e-10 64 28 4 290 1 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PJE6 2.37e-10 64 28 4 290 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P45045 3.44e-10 63 31 0 151 3 xylH Xylose transport system permease protein XylH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8Z2X6 4.28e-10 63 28 4 290 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhi
A6TEB7 2.89e-09 60 29 4 260 3 lsrC Autoinducer 2 import system permease protein LsrC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04190
Feature type CDS
Gene -
Product ABC transporter permease
Location 886062 - 887009 (strand: -1)
Length 948 (nucleotides) / 315 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2501
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1172 Carbohydrate transport and metabolism (G) G Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02057 simple sugar transport system permease protein - -

Protein Sequence

MSMLNLRSDRNIIYLLVIMAGILILQGIFNAGPFFSLSNFQSMTSQMPLLGMLALAMSVCMLTGGINLSIIATTNASGLVMASVLALSPGDGALLLPALLAGLVTAIVIGLINGFLIAKVGVSPILATLGMMTLINGLNVLVSGGTVISGFPPSLLWLGNGTLAGIPMPLILFLLFAFLLWGLLEYTPLGRTVYLMGSNEKATRFSGLNTQKTIIAVYVISSVLCWVAAIIMMAKFNSAKAGYGESYLLIAILASVLGGVNPDGGFGRIIGIVLALFVLQMLESGLNLLGVSSYLIMALWGGILILFIALQKARS

Flanking regions ( +/- flanking 50bp)

ACCGCGTACAACGAAAAACGCCGGGCAGCTAACGGAGGTCATCTGTCATGATGTCAATGCTGAATCTGCGGAGTGACCGCAATATTATTTATCTGCTGGTCATTATGGCGGGGATCCTGATTTTACAGGGAATTTTTAACGCCGGACCTTTCTTCTCCCTATCCAACTTCCAGTCGATGACCTCACAGATGCCGCTGCTGGGTATGCTGGCGCTGGCCATGTCTGTCTGTATGCTGACCGGCGGAATAAATCTGTCCATTATTGCCACTACTAATGCCAGCGGGCTGGTAATGGCAAGTGTGCTGGCGCTCAGCCCCGGTGATGGTGCACTGTTACTGCCCGCTCTGCTGGCAGGATTAGTGACCGCCATTGTGATCGGGCTGATTAACGGGTTCTTAATCGCCAAAGTGGGCGTTTCCCCTATCCTTGCCACACTCGGTATGATGACGTTAATCAACGGGCTGAATGTGCTGGTTTCCGGCGGTACGGTGATTTCAGGCTTTCCGCCGTCACTGTTATGGCTGGGTAACGGCACTCTTGCCGGTATCCCGATGCCGCTTATTCTGTTCCTGCTGTTTGCTTTTCTGCTGTGGGGCTTACTGGAATACACCCCGCTGGGACGCACCGTTTATCTGATGGGCTCGAATGAAAAAGCGACCCGTTTTTCCGGGCTGAATACACAGAAAACCATTATCGCGGTGTATGTCATTTCATCCGTTCTGTGCTGGGTTGCCGCGATTATTATGATGGCGAAATTTAACTCCGCCAAAGCCGGTTACGGGGAATCTTATCTGCTGATCGCCATTCTTGCCTCTGTGCTCGGCGGCGTTAATCCGGATGGCGGTTTCGGGCGCATTATCGGGATCGTACTGGCCTTATTTGTCTTACAGATGCTGGAGAGCGGGCTGAACCTGCTGGGTGTGAGCAGCTATCTCATCATGGCATTGTGGGGCGGTATTCTTATCTTATTTATTGCATTGCAGAAAGCCCGGTCATAAGGAAGCGAATTATGAGTGTCTATTTTATTGGTGTGGATGTCGGGAGCGGC