COG1124


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1124, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Function(s) descr. Amino acid transport and metabolism (E)
Inorganic ion transport and metabolism (P)

Occurence in the database

COG1124 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_967 FBDBKF_05325 72145 72879 1 gsiA Glutathione import ATP-binding protein GsiA Morganella morganii S1
1 group_2322 FBDBKF_17845 30620 31246 -1 dppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S1
2 group_2322 EHELCC_09870 210052 210678 -1 dppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S2
3 group_967 EHELCC_12265 108615 109349 -1 gsiA Glutathione import ATP-binding protein GsiA Morganella morganii S2
4 group_2322 NLDBIP_10250 210052 210678 -1 dppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S4
5 group_967 NLDBIP_12605 108570 109304 -1 gsiA Glutathione import ATP-binding protein GsiA Morganella morganii S4
6 group_2322 LHKJJB_07505 6560 7186 1 dppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S3
7 group_967 LHKJJB_12465 108615 109349 -1 gsiA Glutathione import ATP-binding protein GsiA Morganella morganii S3
8 group_2322 HKOGLL_07055 6560 7186 1 dppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S5
9 group_967 HKOGLL_11080 108615 109349 -1 gsiA Glutathione import ATP-binding protein GsiA Morganella morganii S5
10 group_967 F4V73_RS05780 1228948 1229688 1 ABC transporter ATP-binding protein Morganella psychrotolerans
11 group_2322 F4V73_RS15120 5200 5859 1 ATP-binding cassette domain-containing protein Morganella psychrotolerans
12 group_967 PMI_RS07185 1571778 1572491 1 ABC transporter ATP-binding protein Proteus mirabilis HI4320
13 group_2322 PMI_RS12420 2754905 2755516 -1 ATP-binding cassette domain-containing protein Proteus mirabilis HI4320
14 group_13 PMI_RS14550 3226514 3227266 -1 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein Proteus mirabilis HI4320