Orthogroup:group_2354


Homologs in group_2354

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19000 FBDBKF_19000 Morganella morganii S1 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
EHELCC_18745 EHELCC_18745 Morganella morganii S2 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
NLDBIP_18560 NLDBIP_18560 Morganella morganii S4 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
LHKJJB_18615 LHKJJB_18615 Morganella morganii S3 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
HKOGLL_18350 HKOGLL_18350 Morganella morganii S5 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
F4V73_RS13910 F4V73_RS13910 Morganella psychrotolerans ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
PMI_RS11045 PMI_RS11045 Proteus mirabilis HI4320 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Distribution of group_2354 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2354 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2354

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2354.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ispD 7

Product

# Product Occurence
1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1211 7 I Lipid transport and metabolism (I) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00991 7 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] Terpenoid backbone biosynthesis
Metabolic pathways
Biosynthesis of secondary metabolites		 C5 isoprenoid biosynthesis, non-mevalonate pathway

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01128 7 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Annotations of the 501 SwissProt hits

Annotation Number of occurrences
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 359
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2
Bifunctional 2-aminoethylphosphonate cytidylyltransferase/aminotransferase 1
Bifunctional enzyme IspD/IspF 86
Bifunctional protein GlmU 3
Bifunctional ribulose 5-phosphate reductase/CDP-ribitol pyrophosphorylase Acs1 1
Bifunctional ribulose 5-phosphate reductase/CDP-ribitol pyrophosphorylase Bcs1 1
D-fructose-6-phosphate cytidylyltransferase 1
D-ribitol-5-phosphate cytidylyltransferase 6
Ribitol-5-phosphate cytidylyltransferase 24
Ribitol-5-phosphate cytidylyltransferase 1 9
Ribitol-5-phosphate cytidylyltransferase 2 8

Protein length

Min length 248
Max length 258
Mean length (sd) 256.4 (3.7)
Median length 258.0

Protein length distribution