COG1070


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1070, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Sugar (pentulose or hexulose) kinase
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG1070 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2522 FBDBKF_02200 129719 131314 1 lsrK autoinducer-2 kinase Morganella morganii S1
1 group_897 FBDBKF_04695 140731 142242 1 xylB xylulokinase Morganella morganii S1
2 group_2522 EHELCC_02670 517539 519134 1 lsrK autoinducer-2 kinase Morganella morganii S2
3 group_897 EHELCC_05985 200188 201699 1 xylB xylulokinase Morganella morganii S2
4 group_2522 NLDBIP_00790 161002 162597 -1 lsrK autoinducer-2 kinase Morganella morganii S4
5 group_897 NLDBIP_06305 241253 242764 1 xylB xylulokinase Morganella morganii S4
6 group_2522 LHKJJB_01245 230088 231683 1 lsrK autoinducer-2 kinase Morganella morganii S3
7 group_897 LHKJJB_03185 218777 220288 1 xylB xylulokinase Morganella morganii S3
8 group_2522 HKOGLL_01285 235599 237194 1 lsrK autoinducer-2 kinase Morganella morganii S5
9 group_897 HKOGLL_06660 140641 142152 1 xylB xylulokinase Morganella morganii S5
10 group_2522 F4V73_RS04570 966411 968003 1 lsrK autoinducer-2 kinase Morganella psychrotolerans
11 group_897 F4V73_RS09170 1919472 1920983 1 xylB xylulokinase Morganella psychrotolerans
12 group_897 PMI_RS06145 1347291 1348745 -1 xylB xylulokinase Proteus mirabilis HI4320