COG1008


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1008, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description NADH:ubiquinone oxidoreductase subunit 4 (chain M)
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG1008 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1888 FBDBKF_14110 16180 17700 -1 nuoM NADH-quinone oxidoreductase subunit M Morganella morganii S1
1 group_1888 EHELCC_08170 99285 100805 1 nuoM NADH-quinone oxidoreductase subunit M Morganella morganii S2
2 group_1888 NLDBIP_08495 99285 100805 1 nuoM NADH-quinone oxidoreductase subunit M Morganella morganii S4
3 group_1888 LHKJJB_05770 156354 157874 -1 nuoM NADH-quinone oxidoreductase subunit M Morganella morganii S3
4 group_1888 HKOGLL_05145 83876 85396 1 nuoM NADH-quinone oxidoreductase subunit M Morganella morganii S5
5 group_1888 F4V73_RS02825 596664 598184 1 nuoM NADH-quinone oxidoreductase subunit M Morganella psychrotolerans
6 group_1888 PMI_RS08590 1875169 1876698 -1 nuoM NADH-quinone oxidoreductase subunit M Proteus mirabilis HI4320