COG0620


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0620, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Methionine synthase II (cobalamin-independent)
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0620 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2220 FBDBKF_16975 22506 24791 -1 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase Morganella morganii S1
1 group_2220 EHELCC_16615 43719 46004 1 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase Morganella morganii S2
2 group_2220 NLDBIP_16825 43719 46004 1 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase Morganella morganii S4
3 group_2220 LHKJJB_16645 22506 24791 -1 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase Morganella morganii S3
4 group_2220 HKOGLL_17610 22506 24791 -1 metE 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase Morganella morganii S5
5 group_2220 F4V73_RS18435 20739 23021 -1 metE 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase Morganella psychrotolerans
6 group_2220 PMI_RS17540 3850350 3852623 1 metE 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase Proteus mirabilis HI4320