COG0592


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0592, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA polymerase III sliding clamp (beta) subunit, PCNA homolog
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0592 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3334 FBDBKF_11220 61517 62062 -1 DNA polymerase III beta sliding clamp central domain-containing protein Morganella morganii S1
1 group_2082 FBDBKF_15580 45965 47065 -1 dnaN DNA polymerase III subunit beta Morganella morganii S1
2 group_2082 EHELCC_15940 45265 46365 -1 dnaN DNA polymerase III subunit beta Morganella morganii S2
3 group_3334 EHELCC_17995 38653 39198 1 DNA polymerase III beta sliding clamp central domain-containing protein Morganella morganii S2
4 group_3334 NLDBIP_05325 38479 39024 1 DNA polymerase III beta sliding clamp central domain-containing protein Morganella morganii S4
5 group_2082 NLDBIP_16430 34298 35398 1 dnaN DNA polymerase III subunit beta Morganella morganii S4
6 group_3334 LHKJJB_02205 16003 16548 1 DNA polymerase III beta sliding clamp central domain-containing protein Morganella morganii S3
7 group_2082 LHKJJB_16375 45265 46365 -1 dnaN DNA polymerase III subunit beta Morganella morganii S3
8 group_3334 HKOGLL_15585 39443 39988 1 DNA polymerase III beta sliding clamp central domain-containing protein Morganella morganii S5
9 group_2082 HKOGLL_16145 45265 46365 -1 dnaN DNA polymerase III subunit beta Morganella morganii S5
10 group_2082 F4V73_RS17580 150979 152079 1 dnaN DNA polymerase III subunit beta Morganella psychrotolerans
11 group_2082 PMI_RS15505 3447225 3448328 1 dnaN DNA polymerase III subunit beta Proteus mirabilis HI4320