Homologs in group_2082

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15580 FBDBKF_15580 100.0 Morganella morganii S1 dnaN DNA polymerase III subunit beta
EHELCC_15940 EHELCC_15940 100.0 Morganella morganii S2 dnaN DNA polymerase III subunit beta
LHKJJB_16375 LHKJJB_16375 100.0 Morganella morganii S3 dnaN DNA polymerase III subunit beta
HKOGLL_16145 HKOGLL_16145 100.0 Morganella morganii S5 dnaN DNA polymerase III subunit beta
F4V73_RS17580 F4V73_RS17580 96.7 Morganella psychrotolerans dnaN DNA polymerase III subunit beta
PMI_RS15505 PMI_RS15505 85.0 Proteus mirabilis HI4320 dnaN DNA polymerase III subunit beta

Distribution of the homologs in the orthogroup group_2082

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2082

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A988 0.0 630 81 0 366 1 dnaN Beta sliding clamp Escherichia coli (strain K12)
P0A989 0.0 630 81 0 366 3 dnaN Beta sliding clamp Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A990 0.0 630 81 0 366 3 dnaN Beta sliding clamp Escherichia coli O157:H7
P26464 0.0 627 81 0 366 3 dnaN Beta sliding clamp Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P22838 0.0 623 84 1 367 3 dnaN Beta sliding clamp Proteus mirabilis
Q9KVX5 6.38e-176 496 64 0 366 3 dnaN Beta sliding clamp Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P43744 1.29e-165 470 60 0 366 3 dnaN Beta sliding clamp Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0A121 1.96e-136 396 55 1 367 3 dnaN Beta sliding clamp Pseudomonas putida
P0A120 1.96e-136 396 55 1 367 3 dnaN Beta sliding clamp Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q9I7C4 2.23e-132 385 55 2 369 1 dnaN Beta sliding clamp Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P57127 6.11e-103 310 41 0 365 3 dnaN Beta sliding clamp Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q9EVE4 3.91e-101 306 39 0 365 3 dnaN Beta sliding clamp Buchnera aphidicola subsp. Rhopalosiphum padi
P29439 8.46e-101 305 39 0 365 3 dnaN Beta sliding clamp Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89B36 1.52e-81 256 36 4 372 3 dnaN Beta sliding clamp Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
B8GXP6 8.52e-78 246 37 5 375 1 dnaN Beta sliding clamp Caulobacter vibrioides (strain NA1000 / CB15N)
P0CAU5 8.52e-78 246 37 5 375 1 dnaN Beta sliding clamp Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P52620 2.14e-61 196 66 0 145 3 dnaN Beta sliding clamp (Fragment) Vibrio harveyi
Q1RIS7 2.63e-58 196 31 6 379 1 dnaN Beta sliding clamp Rickettsia bellii (strain RML369-C)
Q68WW0 2.49e-54 186 29 5 381 1 dnaN Beta sliding clamp Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q92I37 1.44e-53 184 29 4 379 1 dnaN Beta sliding clamp Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q4ULS3 2.06e-53 184 29 4 379 3 dnaN Beta sliding clamp Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q9ZDB3 5.98e-53 182 29 5 381 3 dnaN Beta sliding clamp Rickettsia prowazekii (strain Madrid E)
Q9PKW4 1.56e-45 162 30 7 369 3 dnaN Beta sliding clamp Chlamydia muridarum (strain MoPn / Nigg)
P05649 2.04e-44 160 28 9 382 1 dnaN Beta sliding clamp Bacillus subtilis (strain 168)
O84078 2.54e-44 160 29 5 368 3 dnaN Beta sliding clamp Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9Z8K0 8.1e-44 158 28 5 368 3 dnaN Beta sliding clamp Chlamydia pneumoniae
Q8CQK6 3.99e-43 156 27 5 375 3 dnaN Beta sliding clamp Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HK00 3.99e-43 156 27 5 375 3 dnaN Beta sliding clamp Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q9RCA1 1.21e-42 155 27 7 379 3 dnaN Beta sliding clamp Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P72856 2.08e-40 149 28 7 390 3 dnaN Beta sliding clamp Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P0A023 4.96e-40 148 26 5 375 3 dnaN Beta sliding clamp Staphylococcus aureus (strain MW2)
P0A024 4.96e-40 148 26 5 375 1 dnaN Beta sliding clamp Staphylococcus aureus
Q6GD88 4.96e-40 148 26 5 375 3 dnaN Beta sliding clamp Staphylococcus aureus (strain MSSA476)
Q6GKU3 4.96e-40 148 26 5 375 3 dnaN Beta sliding clamp Staphylococcus aureus (strain MRSA252)
P99103 4.96e-40 148 26 5 375 1 dnaN Beta sliding clamp Staphylococcus aureus (strain N315)
P0A022 4.96e-40 148 26 5 375 3 dnaN Beta sliding clamp Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HJZ4 4.96e-40 148 26 5 375 3 dnaN Beta sliding clamp Staphylococcus aureus (strain COL)
P52023 4.17e-37 140 26 5 374 3 dnaN Beta sliding clamp Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q9L7L6 9.12e-37 140 29 10 389 3 dnaN Beta sliding clamp Mycolicibacterium paratuberculosis (strain ATCC BAA-968 / K-10)
P29438 1.14e-36 130 82 0 78 3 dnaN Beta sliding clamp (Fragment) Serratia marcescens
O67725 1.37e-36 139 28 8 370 3 dnaN Beta sliding clamp Aquifex aeolicus (strain VF5)
O83048 2.1e-36 138 25 8 375 3 dnaN Beta sliding clamp Treponema pallidum (strain Nichols)
P27903 4.38e-36 137 27 7 378 3 dnaN Beta sliding clamp Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
O33914 3.15e-34 133 29 8 351 3 dnaN Beta sliding clamp Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WNU1 3.91e-34 133 29 8 351 1 dnaN Beta sliding clamp Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WNU0 3.91e-34 133 29 8 351 1 dnaN Beta sliding clamp Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P46387 6.93e-34 132 28 8 389 3 dnaN Beta sliding clamp Mycobacterium leprae (strain TN)
A0A0E3URH8 2.72e-31 125 26 10 382 1 griR Beta sliding clamp homolog GriR Streptomyces muensis
P52851 2.91e-31 125 27 11 398 3 dnaN Beta sliding clamp Mycolicibacterium smegmatis
A0QND6 2.91e-31 125 27 11 398 1 dnaN Beta sliding clamp Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O06672 1.21e-30 123 24 5 354 1 dnaN Beta sliding clamp Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
P59651 3.15e-30 122 24 5 354 3 dnaN Beta sliding clamp Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q9CJJ1 1.2e-28 117 24 5 351 3 dnaN Beta sliding clamp Lactococcus lactis subsp. lactis (strain IL1403)
O54376 1.57e-28 117 24 5 351 3 dnaN Beta sliding clamp Lactococcus lactis subsp. cremoris (strain MG1363)
P21174 3.74e-27 112 27 6 314 3 dnaN Beta sliding clamp (Fragment) Micrococcus luteus
P34029 4.97e-26 110 23 8 369 3 dnaN Beta sliding clamp Spiroplasma citri
Q9ZLX4 4.88e-20 93 23 10 386 3 dnaN Beta sliding clamp Helicobacter pylori (strain J99 / ATCC 700824)
P24701 5.66e-20 85 64 0 64 3 dnaN Beta sliding clamp (Fragment) Actinobacillus pleuropneumoniae
O25242 1.51e-19 92 23 10 391 1 dnaN Beta sliding clamp Helicobacter pylori (strain ATCC 700392 / 26695)
P24117 1.2e-18 89 22 7 385 3 dnaN Beta sliding clamp Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154)
P33761 2.77e-18 88 20 10 384 1 dnaN Beta sliding clamp Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
P47247 4.4e-07 55 20 12 329 3 dnaN Beta sliding clamp Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q50313 5.46e-07 54 19 16 388 3 dnaN Beta sliding clamp Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_16430
Feature type CDS
Gene dnaN
Product DNA polymerase III subunit beta
Location 34298 - 35398 (strand: 1)
Length 1101 (nucleotides) / 366 (amino acids)

Contig

Accession ZDB_533
Length 80662 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2082
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00712 DNA polymerase III beta subunit, N-terminal domain
PF02767 DNA polymerase III beta subunit, central domain
PF02768 DNA polymerase III beta subunit, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0592 Replication, recombination and repair (L) L DNA polymerase III sliding clamp (beta) subunit, PCNA homolog

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02338 DNA polymerase III subunit beta [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MKFIIEREQLLKPLQQVSSPLGGRPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAAVPLDQPHENGETTVPARKFLDIWRGLPDGAQISVELDGDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETSGSVLRTVATDGHRLAVCSLDIGQELPDHSVIVPRKGVIELMRLLDGGDALLKLEIGSNNIRAHVGGFIFTSKLVDGRFPDYRRVLPKNPDKTLTANCDMLKQAFSRAAILSNEKFRGVRIYLSNNQLRITANNPEQEEAEEIVDVTYDGTDMEIGFNVSYVLDVLNTLKCEDVSVKLTDATSSVQIEDDASDAAAYVVMPMRL

Flanking regions ( +/- flanking 50bp)

CATCAAAGAAGATTTTTCTAACTTAATCCGGACATTATCATCATAGCGCTATGAAATTTATCATTGAACGTGAGCAATTGTTAAAACCCTTACAACAGGTCAGCAGTCCGTTGGGCGGTCGCCCGACCCTACCGATTCTGGGTAACTTACTGCTGAAAGTCTCTGATGGCGTACTGCATCTCACAGGGACAGACCTTGAGATGGAAATGATGGCCGCCGTTCCGCTGGATCAGCCGCATGAAAACGGCGAAACCACGGTACCGGCCCGGAAGTTCCTGGATATCTGGCGTGGTCTGCCGGACGGCGCACAAATCAGTGTTGAGCTTGACGGTGACCGTCTTCTGGTCCGCTCCGGGCGCAGCCGCTTCTCGCTGTCCACTTTACCGGCCTCGGATTTCCCGAATCTGGATGACTGGCAGAGTGATGTCACTTTCTCTCTGCCGCAGGCAACATTGAAACGCCTGATTGAATCCACCCAGTTCTCCATGGCACATCAGGATGTCCGCTATTACTTAAACGGCATGCTGTTTGAAACCAGCGGCTCTGTGCTGCGTACTGTCGCCACAGACGGGCACCGCCTGGCGGTCTGCTCGCTGGATATCGGACAGGAACTGCCGGACCATTCGGTGATCGTGCCGCGTAAAGGGGTTATCGAACTGATGCGCCTGCTCGACGGCGGCGATGCCCTGCTGAAACTCGAAATCGGCAGCAACAACATCCGCGCCCATGTCGGCGGGTTTATTTTTACCTCCAAACTGGTGGATGGCCGCTTCCCGGACTACCGCCGTGTCCTGCCGAAGAACCCGGACAAAACGCTGACGGCAAATTGTGATATGCTGAAGCAGGCTTTTTCCCGTGCGGCGATTTTATCGAACGAGAAATTCCGCGGCGTGCGGATTTACCTGAGCAACAATCAGCTCAGAATTACCGCCAATAACCCGGAGCAGGAAGAAGCCGAAGAGATCGTGGATGTCACCTATGACGGAACGGACATGGAAATCGGGTTCAACGTCAGCTATGTCCTTGATGTTCTTAACACACTGAAATGCGAAGATGTCTCGGTGAAACTGACCGATGCCACCTCCAGCGTGCAGATTGAAGATGACGCCAGTGATGCAGCCGCTTACGTTGTGATGCCGATGCGCCTGTAACACGATGATCCTCTCGCGTTTACTTATCCGTGATTTTCGCAATATCGAAA