Homologs in group_2082

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15580 FBDBKF_15580 85.0 Morganella morganii S1 dnaN DNA polymerase III subunit beta
EHELCC_15940 EHELCC_15940 85.0 Morganella morganii S2 dnaN DNA polymerase III subunit beta
NLDBIP_16430 NLDBIP_16430 85.0 Morganella morganii S4 dnaN DNA polymerase III subunit beta
LHKJJB_16375 LHKJJB_16375 85.0 Morganella morganii S3 dnaN DNA polymerase III subunit beta
HKOGLL_16145 HKOGLL_16145 85.0 Morganella morganii S5 dnaN DNA polymerase III subunit beta
F4V73_RS17580 F4V73_RS17580 85.0 Morganella psychrotolerans dnaN DNA polymerase III subunit beta

Distribution of the homologs in the orthogroup group_2082

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2082

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P22838 0.0 751 100 0 367 3 dnaN Beta sliding clamp Proteus mirabilis
P26464 0.0 639 83 1 367 3 dnaN Beta sliding clamp Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A988 0.0 639 83 1 367 1 dnaN Beta sliding clamp Escherichia coli (strain K12)
P0A989 0.0 639 83 1 367 3 dnaN Beta sliding clamp Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A990 0.0 639 83 1 367 3 dnaN Beta sliding clamp Escherichia coli O157:H7
Q9KVX5 2.11e-179 505 66 1 367 3 dnaN Beta sliding clamp Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P43744 4.97e-165 468 61 1 367 3 dnaN Beta sliding clamp Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0A121 1.69e-133 389 55 3 369 3 dnaN Beta sliding clamp Pseudomonas putida
P0A120 1.69e-133 389 55 3 369 3 dnaN Beta sliding clamp Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q9I7C4 1.92e-129 378 54 4 371 1 dnaN Beta sliding clamp Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P29439 1.64e-101 307 40 1 366 3 dnaN Beta sliding clamp Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57127 8.3e-101 305 42 1 366 3 dnaN Beta sliding clamp Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q9EVE4 1.21e-99 302 39 1 366 3 dnaN Beta sliding clamp Buchnera aphidicola subsp. Rhopalosiphum padi
B8GXP6 6.08e-83 259 39 6 376 1 dnaN Beta sliding clamp Caulobacter vibrioides (strain NA1000 / CB15N)
P0CAU5 6.08e-83 259 39 6 376 1 dnaN Beta sliding clamp Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
Q89B36 3.78e-82 258 35 3 370 3 dnaN Beta sliding clamp Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P52620 1.38e-63 202 66 0 145 3 dnaN Beta sliding clamp (Fragment) Vibrio harveyi
Q1RIS7 4.13e-54 185 29 5 379 1 dnaN Beta sliding clamp Rickettsia bellii (strain RML369-C)
Q68WW0 1.17e-52 182 28 6 381 1 dnaN Beta sliding clamp Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q4ULS3 3.99e-52 180 27 5 379 3 dnaN Beta sliding clamp Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q9ZDB3 2.93e-51 178 28 6 381 3 dnaN Beta sliding clamp Rickettsia prowazekii (strain Madrid E)
Q92I37 3.38e-51 178 27 5 379 1 dnaN Beta sliding clamp Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9PKW4 2.41e-48 170 30 8 371 3 dnaN Beta sliding clamp Chlamydia muridarum (strain MoPn / Nigg)
O84078 2.47e-47 169 29 5 369 3 dnaN Beta sliding clamp Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9Z8K0 5.46e-47 166 29 7 370 3 dnaN Beta sliding clamp Chlamydia pneumoniae
P05649 3.04e-45 162 28 10 379 1 dnaN Beta sliding clamp Bacillus subtilis (strain 168)
Q9RCA1 2.31e-41 152 29 9 381 3 dnaN Beta sliding clamp Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P29438 2.03e-39 137 85 0 78 3 dnaN Beta sliding clamp (Fragment) Serratia marcescens
O67725 5.39e-39 145 27 6 369 3 dnaN Beta sliding clamp Aquifex aeolicus (strain VF5)
P72856 5.95e-39 145 28 7 390 3 dnaN Beta sliding clamp Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8CQK6 6.55e-39 145 28 9 378 3 dnaN Beta sliding clamp Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HK00 6.55e-39 145 28 9 378 3 dnaN Beta sliding clamp Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P52023 6.56e-39 145 27 6 375 3 dnaN Beta sliding clamp Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P0A023 7.13e-37 140 26 7 377 3 dnaN Beta sliding clamp Staphylococcus aureus (strain MW2)
P0A024 7.13e-37 140 26 7 377 1 dnaN Beta sliding clamp Staphylococcus aureus
Q6GD88 7.13e-37 140 26 7 377 3 dnaN Beta sliding clamp Staphylococcus aureus (strain MSSA476)
Q6GKU3 7.13e-37 140 26 7 377 3 dnaN Beta sliding clamp Staphylococcus aureus (strain MRSA252)
P99103 7.13e-37 140 26 7 377 1 dnaN Beta sliding clamp Staphylococcus aureus (strain N315)
P0A022 7.13e-37 140 26 7 377 3 dnaN Beta sliding clamp Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HJZ4 7.13e-37 140 26 7 377 3 dnaN Beta sliding clamp Staphylococcus aureus (strain COL)
O83048 1.24e-36 139 26 8 376 3 dnaN Beta sliding clamp Treponema pallidum (strain Nichols)
O33914 6.54e-35 135 29 9 353 3 dnaN Beta sliding clamp Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WNU1 9.26e-35 135 29 9 353 1 dnaN Beta sliding clamp Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WNU0 9.26e-35 135 29 9 353 1 dnaN Beta sliding clamp Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9L7L6 1.54e-34 134 29 8 349 3 dnaN Beta sliding clamp Mycolicibacterium paratuberculosis (strain ATCC BAA-968 / K-10)
P27903 8.84e-34 131 28 9 380 3 dnaN Beta sliding clamp Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P46387 1.79e-32 128 29 10 351 3 dnaN Beta sliding clamp Mycobacterium leprae (strain TN)
O06672 2.96e-32 127 24 6 356 1 dnaN Beta sliding clamp Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
A0A0E3URH8 6.88e-32 126 27 10 388 1 griR Beta sliding clamp homolog GriR Streptomyces muensis
P59651 7.27e-32 126 24 6 356 3 dnaN Beta sliding clamp Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P52851 1.16e-31 126 28 10 359 3 dnaN Beta sliding clamp Mycolicibacterium smegmatis
A0QND6 1.16e-31 126 28 10 359 1 dnaN Beta sliding clamp Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Q9CJJ1 4.49e-26 110 24 6 350 3 dnaN Beta sliding clamp Lactococcus lactis subsp. lactis (strain IL1403)
P21174 1.87e-25 107 27 6 310 3 dnaN Beta sliding clamp (Fragment) Micrococcus luteus
O54376 4.59e-25 107 24 6 350 3 dnaN Beta sliding clamp Lactococcus lactis subsp. cremoris (strain MG1363)
P34029 3.24e-23 102 23 9 372 3 dnaN Beta sliding clamp Spiroplasma citri
P24701 1.43e-21 90 65 0 64 3 dnaN Beta sliding clamp (Fragment) Actinobacillus pleuropneumoniae
Q9ZLX4 1.07e-19 92 23 10 355 3 dnaN Beta sliding clamp Helicobacter pylori (strain J99 / ATCC 700824)
O25242 4.4e-18 88 24 14 351 1 dnaN Beta sliding clamp Helicobacter pylori (strain ATCC 700392 / 26695)
P33761 3.49e-17 85 20 11 385 1 dnaN Beta sliding clamp Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
P24117 4.82e-17 85 22 7 376 3 dnaN Beta sliding clamp Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154)
Q50313 6.06e-10 63 20 13 364 3 dnaN Beta sliding clamp Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P47247 2.3e-08 58 20 14 363 3 dnaN Beta sliding clamp Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15505
Feature type CDS
Gene dnaN
Product DNA polymerase III subunit beta
Location 3447225 - 3448328 (strand: 1)
Length 1104 (nucleotides) / 367 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2082
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00712 DNA polymerase III beta subunit, N-terminal domain
PF02767 DNA polymerase III beta subunit, central domain
PF02768 DNA polymerase III beta subunit, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0592 Replication, recombination and repair (L) L DNA polymerase III sliding clamp (beta) subunit, PCNA homolog

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02338 DNA polymerase III subunit beta [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLSQSHEIGATTVPARKFFDIWRGLPEGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETENTELRTVATDGHRLAVCAMDIGQSLPGHSVIVPRKGVIELMRLLDGSGESLLQLQIGSNNLRAHVGDFIFTSKLVDGRFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNGQLKITANNPEQEEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKCEEVKLLLTDAVSSVQVENVASAAAAYVVMPMRL

Flanking regions ( +/- flanking 50bp)

TATCAAAGAAGATTTTTCTAACTTAATCAGAACATTATCATCCTAGCGCTATGAAATTTATCATTGAACGAGAACAGCTGCTAAAGCCGCTGCAACAAGTCAGCGGCCCTTTAGGCGGTCGCCCAACTTTACCTATTTTAGGCAACCTGTTGCTTAAGGTGACGGAGAATACCTTATCGCTAACAGGTACAGACCTTGAGATGGAGATGATGGCAAGAGTGAGTCTTAGCCAATCTCATGAAATCGGTGCAACGACTGTTCCTGCGCGTAAGTTTTTTGATATTTGGCGCGGATTACCTGAGGGAGCAGAAATCAGCGTAGAATTAGACGGTGATCGCTTACTCGTTCGTTCAGGAAGAAGTCGTTTTTCTTTATCGACACTCCCTGCGTCTGATTTCCCGAATTTAGACGATTGGCAAAGTGAGGTTGAATTTACTTTGCCACAAGCCACTCTAAAACGTTTGATTGAATCCACACAGTTTTCAATGGCGCATCAAGATGTGCGTTACTACCTCAACGGTATGTTATTTGAAACGGAAAACACGGAATTGCGCACAGTTGCTACTGATGGTCACCGTTTAGCGGTCTGTGCCATGGATATTGGACAATCTTTACCCGGACATTCTGTTATTGTGCCACGTAAAGGTGTTATTGAACTGATGCGTTTACTTGATGGCAGTGGTGAGAGTTTATTACAGTTACAAATTGGCAGTAATAATTTACGCGCTCATGTAGGCGACTTTATTTTTACCTCGAAACTGGTTGATGGTCGTTTCCCTGACTATCGCCGCGTATTACCGAAAAATCCGACTAAAACAGTTATCGCAGGTTGTGATATCCTCAAACAAGCGTTCTCTCGTGCGGCGATTTTATCGAATGAAAAATTCCGTGGGGTGCGTATTAACCTCACTAATGGACAATTAAAAATTACCGCTAACAACCCTGAACAAGAAGAAGCAGAAGAAATTGTCGATGTTCAGTATCAGGGGGAAGAGATGGAGATCGGTTTTAATGTGAGCTACCTTCTTGATGTGTTAAACACACTCAAGTGTGAAGAGGTAAAATTATTACTGACTGATGCTGTTTCAAGTGTACAGGTTGAGAATGTGGCAAGTGCAGCCGCAGCTTATGTTGTTATGCCGATGCGCTTGTAATCACGATTAATATGATTTTATCCCGTTTATTGATCCGCCATTTTAGAAAT