Homologs in group_3335

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_17995 EHELCC_17995 100.0 Morganella morganii S2 - DNA polymerase III beta sliding clamp central domain-containing protein
NLDBIP_05325 NLDBIP_05325 100.0 Morganella morganii S4 - DNA polymerase III beta sliding clamp central domain-containing protein
LHKJJB_02205 LHKJJB_02205 100.0 Morganella morganii S3 - DNA polymerase III beta sliding clamp central domain-containing protein
HKOGLL_15585 HKOGLL_15585 100.0 Morganella morganii S5 - DNA polymerase III beta sliding clamp central domain-containing protein

Distribution of the homologs in the orthogroup group_3335

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3335

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_11220
Feature type CDS
Gene -
Product DNA polymerase III beta sliding clamp central domain-containing protein
Location 61517 - 62062 (strand: -1)
Length 546 (nucleotides) / 181 (amino acids)
In genomic island GI33

Contig

Accession contig_13
Length 135581 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3335
Orthogroup size 5
N. genomes 5

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0592 Replication, recombination and repair (L) L DNA polymerase III sliding clamp (beta) subunit, PCNA homolog

Protein Sequence

MQLRIDKATLLAVMECMAVRDVRYYICGICFLPDGKVAGTDGHMLAYGEHNNQIDHEVILSVGKLPIKTFDYAVFDTDAGIVKLLTDEDVTVGVTLCGVIDGKYPDVSRVMRNARNADEKLPSKIGFNAGYMAKLEKIAKYVNPKLPALQIQVKTACDAVICDIVNPHKTPVSVLIMPMRI

Flanking regions ( +/- flanking 50bp)

GTTGAATGACTAACACCCCGAAGCGGGGATAACTATTAACAGGAGTACGCATGCAATTGAGAATAGACAAAGCAACGCTTCTGGCTGTCATGGAATGCATGGCGGTAAGAGATGTTCGCTATTACATCTGCGGAATCTGCTTCCTTCCCGATGGAAAGGTGGCGGGCACTGACGGACACATGCTTGCTTACGGTGAGCATAATAACCAGATTGACCACGAAGTTATCCTGTCTGTCGGAAAGCTACCTATCAAAACGTTTGATTATGCGGTTTTTGACACAGACGCAGGCATTGTGAAACTTCTGACCGATGAAGACGTAACCGTTGGTGTCACGCTTTGCGGTGTCATTGATGGTAAATATCCGGATGTTTCCAGGGTAATGAGAAATGCAAGAAACGCCGATGAGAAGTTGCCGTCAAAAATAGGATTTAACGCTGGATATATGGCGAAGCTGGAAAAAATAGCCAAGTACGTTAATCCGAAACTTCCTGCACTTCAAATTCAGGTAAAGACGGCGTGTGATGCGGTTATTTGCGACATCGTAAACCCACATAAAACACCTGTGTCGGTATTGATTATGCCGATGCGGATTTAGTTATCGGACATCACGTAGCACAGGGAAGTGCATAGGAGGAAGTAACATGC