COG0590


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0590, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description tRNA(Arg) A34 adenosine deaminase TadA
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0590 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_539 FBDBKF_01240 238720 239247 -1 tadA tRNA adenosine(34) deaminase TadA Morganella morganii S1
1 group_2568 FBDBKF_02735 244119 244577 -1 tadA tRNA(Arg) A34 adenosine deaminase TadA Morganella morganii S1
2 group_539 EHELCC_00305 69621 70148 1 tadA tRNA adenosine(34) deaminase TadA Morganella morganii S2
3 group_2568 EHELCC_03205 631939 632397 -1 tadA tRNA(Arg) A34 adenosine deaminase TadA Morganella morganii S2
4 group_2568 NLDBIP_00255 47739 48197 1 tadA tRNA(Arg) A34 adenosine deaminase TadA Morganella morganii S4
5 group_539 NLDBIP_03155 609988 610515 -1 tadA tRNA adenosine(34) deaminase TadA Morganella morganii S4
6 group_2568 LHKJJB_01780 344488 344946 -1 tadA tRNA(Arg) A34 adenosine deaminase TadA Morganella morganii S3
7 group_539 LHKJJB_04670 217229 217756 -1 tadA tRNA adenosine(34) deaminase TadA Morganella morganii S3
8 group_2568 HKOGLL_01820 349999 350457 -1 tadA tRNA(Arg) A34 adenosine deaminase TadA Morganella morganii S5
9 group_539 HKOGLL_02375 69826 70353 1 tadA tRNA adenosine(34) deaminase TadA Morganella morganii S5
10 group_2568 F4V73_RS05215 1110504 1110962 -1 nucleoside deaminase Morganella psychrotolerans
11 group_539 F4V73_RS07280 1519605 1520129 -1 tadA tRNA adenosine(34) deaminase TadA Morganella psychrotolerans
12 group_539 PMI_RS09290 2030506 2031036 -1 tadA tRNA adenosine(34) deaminase TadA Proteus mirabilis HI4320