COG0566


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0566, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description tRNA G18 (ribose-2'-O)-methylase SpoU
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0566 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1372 FBDBKF_08490 80252 80986 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S1
1 group_1572 FBDBKF_10195 132410 133498 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S1
2 group_1727 FBDBKF_12055 62064 62717 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella morganii S1
3 group_1572 EHELCC_04995 324375 325463 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S2
4 group_1372 EHELCC_13035 82739 83473 -1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S2
5 group_1727 EHELCC_14250 71988 72641 -1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella morganii S2
6 group_1572 NLDBIP_04995 324171 325259 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S4
7 group_1372 NLDBIP_13375 82739 83473 -1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S4
8 group_1727 NLDBIP_15345 75925 76578 -1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella morganii S4
9 group_1372 LHKJJB_13180 78970 79704 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S3
10 group_1572 LHKJJB_13635 10119 11207 1 spoU tRNA/rRNA methyltransferase Morganella morganii S3
11 group_1727 LHKJJB_15265 62064 62717 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella morganii S3
12 group_1372 HKOGLL_11850 82739 83473 -1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella morganii S5
13 group_1572 HKOGLL_12900 133191 134279 -1 spoU tRNA/rRNA methyltransferase Morganella morganii S5
14 group_1727 HKOGLL_14385 48727 49380 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella morganii S5
15 group_1572 F4V73_RS00135 36468 37547 1 tRNA/rRNA methyltransferase Morganella psychrotolerans
16 group_1372 F4V73_RS09710 46443 47177 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Morganella psychrotolerans
17 group_1727 F4V73_RS14590 151659 152363 -1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Morganella psychrotolerans
18 group_1572 PMI_RS01975 465490 466593 1 tRNA/rRNA methyltransferase Proteus mirabilis HI4320
19 group_1727 PMI_RS14160 3143074 3143793 1 trmH tRNA (guanosine(18)-2'-O)-methyltransferase TrmH Proteus mirabilis HI4320
20 group_1372 PMI_RS16785 3701905 3702636 1 rlmB 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB Proteus mirabilis HI4320