COG0555


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0555, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type sulfate transport system, permease component
Function(s) descr. Inorganic ion transport and metabolism (P)

Occurence in the database

COG0555 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_504 FBDBKF_00990 179977 180804 -1 cysT sulfate/thiosulfate ABC transporter permease CysT Morganella morganii S1
1 group_2860 FBDBKF_10950 15505 16293 1 modB ABC-type sulfate transport system, permease component Morganella morganii S1
2 group_504 EHELCC_00555 128064 128891 1 cysT sulfate/thiosulfate ABC transporter permease CysT Morganella morganii S2
3 group_2860 EHELCC_05275 43175 43963 -1 modB ABC-type sulfate transport system, permease component Morganella morganii S2
4 group_504 NLDBIP_02905 551245 552072 -1 cysT sulfate/thiosulfate ABC transporter permease CysT Morganella morganii S4
5 group_2860 NLDBIP_05595 84240 85028 -1 modB ABC-type sulfate transport system, permease component Morganella morganii S4
6 group_2860 LHKJJB_02475 61764 62552 -1 modB ABC-type sulfate transport system, permease component Morganella morganii S3
7 group_504 LHKJJB_04420 158486 159313 -1 cysT sulfate/thiosulfate ABC transporter permease CysT Morganella morganii S3
8 group_504 HKOGLL_02625 128269 129096 1 cysT sulfate/thiosulfate ABC transporter permease CysT Morganella morganii S5
9 group_2860 HKOGLL_15855 85204 85992 -1 modB ABC-type sulfate transport system, permease component Morganella morganii S5
10 group_504 F4V73_RS07065 1466473 1467300 -1 cysT sulfate/thiosulfate ABC transporter permease CysT Morganella psychrotolerans
11 group_2860 PMI_RS07485 1631657 1632433 -1 ABC transporter permease Proteus mirabilis HI4320
12 group_504 PMI_RS09050 1971578 1972411 -1 cysT sulfate/thiosulfate ABC transporter permease CysT Proteus mirabilis HI4320