COG0542


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0542, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 24 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ATP-dependent Clp protease, ATP-binding subunit ClpA
Function(s) descr. Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG0542 is associated with 24 different proteins (see tab "Protein list" and "Profile")
The 24 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_147 FBDBKF_01335 258317 261037 1 tssH type VI secretion system ATPase TssH Morganella morganii S1
1 group_1214 FBDBKF_07065 76459 78744 1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella morganii S1
2 group_2052 FBDBKF_15370 81826 84399 1 clpB ATP-dependent chaperone ClpB Morganella morganii S1
3 group_147 EHELCC_00210 47831 50551 -1 tssH type VI secretion system ATPase TssH Morganella morganii S2
4 group_1214 EHELCC_03905 107442 109727 -1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella morganii S2
5 group_2052 EHELCC_10875 507 3080 -1 clpB ATP-dependent chaperone ClpB Morganella morganii S2
6 group_147 NLDBIP_03250 629585 632305 1 tssH type VI secretion system ATPase TssH Morganella morganii S4
7 group_1214 NLDBIP_03905 107238 109523 -1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella morganii S4
8 group_2052 NLDBIP_11220 507 3080 -1 clpB ATP-dependent chaperone ClpB Morganella morganii S4
9 group_147 LHKJJB_04765 236826 239546 1 tssH type VI secretion system ATPase TssH Morganella morganii S3
10 group_1214 LHKJJB_09735 107352 109637 -1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella morganii S3
11 group_2052 LHKJJB_11080 507 3080 -1 clpB ATP-dependent chaperone ClpB Morganella morganii S3
12 group_147 HKOGLL_02280 48036 50756 -1 tssH type VI secretion system ATPase TssH Morganella morganii S5
13 group_1214 HKOGLL_09240 81415 83700 1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella morganii S5
14 group_2052 HKOGLL_09690 507 3080 -1 clpB ATP-dependent chaperone ClpB Morganella morganii S5
15 group_1214 F4V73_RS01250 264241 266526 1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Morganella psychrotolerans
16 group_147 F4V73_RS02335 495047 497734 -1 tssH type VI secretion system ATPase TssH Morganella psychrotolerans
17 group_147 F4V73_RS06995 1451477 1453738 -1 AAA family ATPase Morganella psychrotolerans
18 group_147 F4V73_RS09390 1976445 1979222 -1 tssH type VI secretion system ATPase TssH Morganella psychrotolerans
19 group_2052 F4V73_RS12085 553 3126 -1 clpB ATP-dependent chaperone ClpB Morganella psychrotolerans
20 group_147 F4V73_RS16840 194692 197388 -1 tssH type VI secretion system ATPase TssH Morganella psychrotolerans
21 group_2052 PMI_RS01920 449810 452386 1 clpB ATP-dependent chaperone ClpB Proteus mirabilis HI4320
22 group_1214 PMI_RS03395 749183 751477 1 clpA ATP-dependent Clp protease ATP-binding subunit ClpA Proteus mirabilis HI4320
23 group_147 PMI_RS03640 817939 820650 -1 tssH type VI secretion system ATPase TssH Proteus mirabilis HI4320