COG0542
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0542, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 24 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description |
ATP-dependent Clp protease, ATP-binding subunit ClpA |
Function(s) descr. |
Posttranslational modification, protein turnover, chaperones (O) |
Occurence in the database
COG0542 is associated with 24 different proteins (see tab "Protein list" and "Profile") |
The 24 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_147 |
FBDBKF_01335 |
258317 |
261037 |
1 |
tssH |
type VI secretion system ATPase TssH |
Morganella morganii S1 |
1 |
group_1214 |
FBDBKF_07065 |
76459 |
78744 |
1 |
clpA |
ATP-dependent Clp protease ATP-binding subunit ClpA |
Morganella morganii S1 |
2 |
group_2052 |
FBDBKF_15370 |
81826 |
84399 |
1 |
clpB |
ATP-dependent chaperone ClpB |
Morganella morganii S1 |
3 |
group_147 |
EHELCC_00210 |
47831 |
50551 |
-1 |
tssH |
type VI secretion system ATPase TssH |
Morganella morganii S2 |
4 |
group_1214 |
EHELCC_03905 |
107442 |
109727 |
-1 |
clpA |
ATP-dependent Clp protease ATP-binding subunit ClpA |
Morganella morganii S2 |
5 |
group_2052 |
EHELCC_10875 |
507 |
3080 |
-1 |
clpB |
ATP-dependent chaperone ClpB |
Morganella morganii S2 |
6 |
group_147 |
NLDBIP_03250 |
629585 |
632305 |
1 |
tssH |
type VI secretion system ATPase TssH |
Morganella morganii S4 |
7 |
group_1214 |
NLDBIP_03905 |
107238 |
109523 |
-1 |
clpA |
ATP-dependent Clp protease ATP-binding subunit ClpA |
Morganella morganii S4 |
8 |
group_2052 |
NLDBIP_11220 |
507 |
3080 |
-1 |
clpB |
ATP-dependent chaperone ClpB |
Morganella morganii S4 |
9 |
group_147 |
LHKJJB_04765 |
236826 |
239546 |
1 |
tssH |
type VI secretion system ATPase TssH |
Morganella morganii S3 |
10 |
group_1214 |
LHKJJB_09735 |
107352 |
109637 |
-1 |
clpA |
ATP-dependent Clp protease ATP-binding subunit ClpA |
Morganella morganii S3 |
11 |
group_2052 |
LHKJJB_11080 |
507 |
3080 |
-1 |
clpB |
ATP-dependent chaperone ClpB |
Morganella morganii S3 |
12 |
group_147 |
HKOGLL_02280 |
48036 |
50756 |
-1 |
tssH |
type VI secretion system ATPase TssH |
Morganella morganii S5 |
13 |
group_1214 |
HKOGLL_09240 |
81415 |
83700 |
1 |
clpA |
ATP-dependent Clp protease ATP-binding subunit ClpA |
Morganella morganii S5 |
14 |
group_2052 |
HKOGLL_09690 |
507 |
3080 |
-1 |
clpB |
ATP-dependent chaperone ClpB |
Morganella morganii S5 |
15 |
group_1214 |
F4V73_RS01250 |
264241 |
266526 |
1 |
clpA |
ATP-dependent Clp protease ATP-binding subunit ClpA |
Morganella psychrotolerans |
16 |
group_147 |
F4V73_RS02335 |
495047 |
497734 |
-1 |
tssH |
type VI secretion system ATPase TssH |
Morganella psychrotolerans |
17 |
group_147 |
F4V73_RS06995 |
1451477 |
1453738 |
-1 |
|
AAA family ATPase |
Morganella psychrotolerans |
18 |
group_147 |
F4V73_RS09390 |
1976445 |
1979222 |
-1 |
tssH |
type VI secretion system ATPase TssH |
Morganella psychrotolerans |
19 |
group_2052 |
F4V73_RS12085 |
553 |
3126 |
-1 |
clpB |
ATP-dependent chaperone ClpB |
Morganella psychrotolerans |
20 |
group_147 |
F4V73_RS16840 |
194692 |
197388 |
-1 |
tssH |
type VI secretion system ATPase TssH |
Morganella psychrotolerans |
21 |
group_2052 |
PMI_RS01920 |
449810 |
452386 |
1 |
clpB |
ATP-dependent chaperone ClpB |
Proteus mirabilis HI4320 |
22 |
group_1214 |
PMI_RS03395 |
749183 |
751477 |
1 |
clpA |
ATP-dependent Clp protease ATP-binding subunit ClpA |
Proteus mirabilis HI4320 |
23 |
group_147 |
PMI_RS03640 |
817939 |
820650 |
-1 |
tssH |
type VI secretion system ATPase TssH |
Proteus mirabilis HI4320 |