COG0522


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0522, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal protein S4 or related protein
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0522 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2375 FBDBKF_19125 11191 11811 -1 rpsD 30S ribosomal protein S4 Morganella morganii S1
1 group_2375 EHELCC_18870 11191 11811 -1 rpsD 30S ribosomal protein S4 Morganella morganii S2
2 group_2375 NLDBIP_18885 11191 11811 -1 rpsD 30S ribosomal protein S4 Morganella morganii S4
3 group_2375 LHKJJB_18740 11191 11811 -1 rpsD 30S ribosomal protein S4 Morganella morganii S3
4 group_2375 HKOGLL_18475 11191 11811 -1 rpsD 30S ribosomal protein S4 Morganella morganii S5
5 group_2375 F4V73_RS19040 18525 19145 1 rpsD 30S ribosomal protein S4 Morganella psychrotolerans
6 group_2375 PMI_RS16265 3594006 3594626 1 rpsD 30S ribosomal protein S4 Proteus mirabilis HI4320