COG0399


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0399, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description dTDP-4-amino-4,6-dideoxygalactose transaminase
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG0399 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1335 FBDBKF_08255 29048 30178 1 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase Morganella morganii S1
1 group_1803 FBDBKF_13380 54012 55157 -1 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase Morganella morganii S1
2 group_1803 EHELCC_08715 220034 221179 1 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase Morganella morganii S2
3 group_1335 EHELCC_13270 133547 134677 -1 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase Morganella morganii S2
4 group_1803 NLDBIP_09040 220034 221179 1 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase Morganella morganii S4
5 group_1335 NLDBIP_13610 133547 134677 -1 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase Morganella morganii S4
6 group_1803 LHKJJB_05225 35980 37125 -1 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase Morganella morganii S3
7 group_1335 LHKJJB_12945 27766 28896 1 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase Morganella morganii S3
8 group_1803 HKOGLL_05690 204625 205770 1 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase Morganella morganii S5
9 group_1335 HKOGLL_12085 133547 134677 -1 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase Morganella morganii S5
10 group_1803 F4V73_RS03380 720654 721799 1 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase Morganella psychrotolerans
11 group_1335 F4V73_RS18805 30209 31339 1 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase Morganella psychrotolerans
12 group_1803 PMI_RS05070 1107654 1108799 1 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase Proteus mirabilis HI4320
13 group_1335 PMI_RS16515 3642445 3643575 1 rffA dTDP-4-amino-4,6-dideoxygalactose transaminase Proteus mirabilis HI4320