COG0389


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0389, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0389 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2023 FBDBKF_15180 46155 47210 1 dinB DNA polymerase IV Morganella morganii S1
1 group_2995 FBDBKF_17330 42238 43500 -1 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair Morganella morganii S1
2 group_2995 EHELCC_01560 312001 313263 1 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair Morganella morganii S2
3 group_2023 EHELCC_11065 37696 38751 -1 dinB DNA polymerase IV Morganella morganii S2
4 group_2995 NLDBIP_01900 366873 368135 -1 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair Morganella morganii S4
5 group_2023 NLDBIP_11410 37696 38751 -1 dinB DNA polymerase IV Morganella morganii S4
6 group_2995 LHKJJB_00135 24550 25812 1 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair Morganella morganii S3
7 group_2023 LHKJJB_11270 37696 38751 -1 dinB DNA polymerase IV Morganella morganii S3
8 group_2995 HKOGLL_00175 30061 31323 1 dinP Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair Morganella morganii S5
9 group_2023 HKOGLL_09880 37696 38751 -1 dinB DNA polymerase IV Morganella morganii S5
10 group_2023 F4V73_RS12265 37187 38242 -1 dinB DNA polymerase IV Morganella psychrotolerans
11 group_2023 PMI_RS01735 410577 411632 1 dinB DNA polymerase IV Proteus mirabilis HI4320
12 group_2995 PMI_RS12285 2725243 2726511 1 umuC translesion error-prone DNA polymerase V subunit UmuC Proteus mirabilis HI4320