COG0309


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0309, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Carbamoyl dehydratase HypE (hydrogenase maturation factor)
Function(s) descr. Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG0309 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2274 FBDBKF_17485 31058 32077 -1 hypE hydrogenase expression/formation protein HypE Morganella morganii S1
1 group_2274 EHELCC_17380 31058 32077 -1 hypE hydrogenase expression/formation protein HypE Morganella morganii S2
2 group_2274 NLDBIP_17815 10719 11738 1 hypE hydrogenase expression/formation protein HypE Morganella morganii S4
3 group_2274 LHKJJB_17735 10717 11736 1 hypE hydrogenase expression/formation protein HypE Morganella morganii S3
4 group_2274 HKOGLL_17745 10717 11736 1 hypE hydrogenase expression/formation protein HypE Morganella morganii S5
5 group_2274 F4V73_RS16660 154966 155985 -1 hypE hydrogenase expression/formation protein HypE Morganella psychrotolerans
6 group_2274 PMI_RS00195 61992 63011 1 hypE hydrogenase expression/formation protein HypE Proteus mirabilis HI4320