COG0122


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0122, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0122 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1617 FBDBKF_10665 100380 101291 -1 alkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase Morganella morganii S1
1 group_1617 EHELCC_15000 100370 101281 -1 alkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase Morganella morganii S2
2 group_1617 NLDBIP_14830 100370 101281 -1 alkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase Morganella morganii S4
3 group_1617 LHKJJB_14515 40445 41356 1 alkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase Morganella morganii S3
4 group_1617 HKOGLL_13135 40445 41356 1 alkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase Morganella morganii S5
5 group_1617 F4V73_RS14375 103365 104273 -1 DNA-3-methyladenine glycosylase 2 Morganella psychrotolerans
6 group_1617 PMI_RS05980 1312164 1312775 1 DNA-3-methyladenine glycosylase Proteus mirabilis HI4320