Orthogroup:group_976



Homologs in group_976

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05395 FBDBKF_05395 Morganella morganii S1 topB DNA topoisomerase IA
EHELCC_12195 EHELCC_12195 Morganella morganii S2 topB DNA topoisomerase IA
NLDBIP_12535 NLDBIP_12535 Morganella morganii S4 topB DNA topoisomerase IA
LHKJJB_12395 LHKJJB_12395 Morganella morganii S3 topB DNA topoisomerase IA
HKOGLL_11010 HKOGLL_11010 Morganella morganii S5 topB DNA topoisomerase IA
F4V73_RS03900 F4V73_RS03900 Morganella psychrotolerans - DNA topoisomerase III
PMI_RS07250 PMI_RS07250 Proteus mirabilis HI4320 - DNA topoisomerase III

Distribution of group_976 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_976 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_976

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_976.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 topB 5
2 - 2

Product

# Product Occurence
1 DNA topoisomerase IA 5
2 DNA topoisomerase III 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0550 7 L Replication, recombination and repair (L) DNA topoisomerase IA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03169 7 DNA topoisomerase III [EC:5.6.2.1] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01131 7 DNA topoisomerase
PF01751 7 Toprim domain

Annotations of the 128 SwissProt hits

Annotation Number of occurrences
DNA topoisomerase 1 64
DNA topoisomerase 1 type prokaryotic 1
DNA topoisomerase 3 32
DNA topoisomerase 3-alpha 5
DNA topoisomerase 3-beta 3
DNA topoisomerase 3-beta-1 2
DNA topoisomerase I, plasmid 1
Putative DNA topoisomerase 3 1
Reverse gyrase 10
Reverse gyrase 1 3
Reverse gyrase 2 4
Reverse gyrase subunit A 2

Protein length

Min length 638
Max length 655
Mean length (sd) 651.9 (6.1)
Median length 654.0

Protein length distribution