Orthogroup:group_975



Homologs in group_975

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05390 FBDBKF_05390 Morganella morganii S1 xthA exodeoxyribonuclease III
EHELCC_12200 EHELCC_12200 Morganella morganii S2 xthA exodeoxyribonuclease III
NLDBIP_12540 NLDBIP_12540 Morganella morganii S4 xthA exodeoxyribonuclease III
LHKJJB_12400 LHKJJB_12400 Morganella morganii S3 xthA exodeoxyribonuclease III
HKOGLL_11015 HKOGLL_11015 Morganella morganii S5 xthA exodeoxyribonuclease III
F4V73_RS05845 F4V73_RS05845 Morganella psychrotolerans xthA exodeoxyribonuclease III
PMI_RS07245 PMI_RS07245 Proteus mirabilis HI4320 xthA exodeoxyribonuclease III

Distribution of group_975 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_975 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_975

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_975.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 xthA 7

Product

# Product Occurence
1 exodeoxyribonuclease III 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0708 7 L Replication, recombination and repair (L) Exonuclease III

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01142 7 exodeoxyribonuclease III [EC:3.1.11.2] Base excision repair -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03372 7 Endonuclease/Exonuclease/phosphatase family

Annotations of the 27 SwissProt hits

Annotation Number of occurrences
DNA repair nuclease APEX1 1
DNA repair nuclease/redox regulator APEX1 8
DNA uridine endonuclease 1
DNA-(apurinic or apyrimidinic site) endonuclease 2
DNA-(apurinic or apyrimidinic site) endonuclease 2 6
DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 1
Exodeoxyribonuclease 3
Exodeoxyribonuclease III 4
Recombination repair protein 1 1

Protein length

Min length 268
Max length 269
Mean length (sd) 268.9 (0.4)
Median length 269.0

Protein length distribution