Orthogroup:group_892


Homologs in group_892

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04660 FBDBKF_04660 Morganella morganii S1 rimO 30S ribosomal protein S12 methylthiotransferase RimO
EHELCC_05950 EHELCC_05950 Morganella morganii S2 rimO 30S ribosomal protein S12 methylthiotransferase RimO
NLDBIP_06270 NLDBIP_06270 Morganella morganii S4 rimO 30S ribosomal protein S12 methylthiotransferase RimO
LHKJJB_03150 LHKJJB_03150 Morganella morganii S3 rimO 30S ribosomal protein S12 methylthiotransferase RimO
HKOGLL_06625 HKOGLL_06625 Morganella morganii S5 rimO 30S ribosomal protein S12 methylthiotransferase RimO
F4V73_RS09110 F4V73_RS09110 Morganella psychrotolerans rimO 30S ribosomal protein S12 methylthiotransferase RimO
PMI_RS15730 PMI_RS15730 Proteus mirabilis HI4320 rimO 30S ribosomal protein S12 methylthiotransferase RimO

Distribution of group_892 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_892 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_892

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_892.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rimO 7

Product

# Product Occurence
1 30S ribosomal protein S12 methylthiotransferase RimO 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0621 7 J Translation, ribosomal structure and biogenesis (J) tRNA A37 methylthiotransferase MiaB

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K14441 7 ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00919 7 Uncharacterized protein family UPF0004
PF04055 7 Radical SAM superfamily
PF18693 7 TRAM domain

Annotations of the 514 SwissProt hits

Annotation Number of occurrences
Ribosomal protein uS12 methylthiotransferase RimO 412
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB 1
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 99
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 1 1
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 2 1

Protein length

Min length 443
Max length 446
Mean length (sd) 445.6 (1.1)
Median length 446.0

Protein length distribution