Orthogroup:group_873


Homologs in group_873

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04430 FBDBKF_04430 Morganella morganii S1 sgrR HTH-type transcriptional regulator SgrR
EHELCC_05720 EHELCC_05720 Morganella morganii S2 sgrR HTH-type transcriptional regulator SgrR
NLDBIP_06040 NLDBIP_06040 Morganella morganii S4 sgrR HTH-type transcriptional regulator SgrR
LHKJJB_02920 LHKJJB_02920 Morganella morganii S3 sgrR HTH-type transcriptional regulator SgrR
HKOGLL_06395 HKOGLL_06395 Morganella morganii S5 sgrR HTH-type transcriptional regulator SgrR
F4V73_RS08875 F4V73_RS08875 Morganella psychrotolerans sgrR HTH-type transcriptional regulator SgrR
PMI_RS10285 PMI_RS10285 Proteus mirabilis HI4320 sgrR HTH-type transcriptional regulator SgrR

Distribution of group_873 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_873 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_873

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_873.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sgrR 7

Product

# Product Occurence
1 HTH-type transcriptional regulator SgrR 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4533 7 K Transcription (K) DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a periplasmic-type solute-binding domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11925 7 SgrR family transcriptional regulator - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00496 7 Bacterial extracellular solute-binding proteins, family 5 Middle
PF12793 7 Sugar transport-related sRNA regulator N-term

Annotations of the 35 SwissProt hits

Annotation Number of occurrences
Dipeptide-binding protein 1
HTH-type transcriptional regulator SgrR 23
Heme-binding protein A 1
Peptide transport periplasmic protein SapA 2
Periplasmic murein peptide-binding protein MppA 1
Putative binding protein HI_0213 1
Putative peptide-binding periplasmic protein BAB2_1049 1
Putative peptide-binding periplasmic protein BMEII0210 1
Putative peptide-binding periplasmic protein BRA1090/BS1330_II1082 1
Putative peptide-binding periplasmic protein BruAb2_1030 1
Uncharacterized protein YbaE 1
Uncharacterized protein YhjP 1

Protein length

Min length 554
Max length 559
Mean length (sd) 554.7 (1.9)
Median length 554.0

Protein length distribution