COG3852


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3852, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Signal transduction histidine kinase NtrB, nitrogen specific
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG3852 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2846 FBDBKF_10585 77354 79129 1 atoS two-component system sensor histidine kinase AtoS Morganella morganii S1
1 group_1735 FBDBKF_12105 75989 77038 1 glnL nitrogen regulation protein NR(II) Morganella morganii S1
2 group_1735 EHELCC_14200 57667 58716 -1 glnL nitrogen regulation protein NR(II) Morganella morganii S2
3 group_2846 EHELCC_14920 77344 79119 1 atoS two-component system sensor histidine kinase AtoS Morganella morganii S2
4 group_2846 NLDBIP_14750 77344 79119 1 atoS two-component system sensor histidine kinase AtoS Morganella morganii S4
5 group_1735 NLDBIP_15295 61604 62653 -1 glnL nitrogen regulation protein NR(II) Morganella morganii S4
6 group_2846 LHKJJB_14595 62607 64382 -1 atoS two-component system sensor histidine kinase AtoS Morganella morganii S3
7 group_1735 LHKJJB_15315 75989 77038 1 glnL nitrogen regulation protein NR(II) Morganella morganii S3
8 group_2846 HKOGLL_13215 62607 64382 -1 atoS two-component system sensor histidine kinase AtoS Morganella morganii S5
9 group_1735 HKOGLL_14435 62652 63701 1 glnL nitrogen regulation protein NR(II) Morganella morganii S5
10 group_2846 F4V73_RS14295 79860 81680 1 atoS two-component system sensor histidine kinase AtoS Morganella psychrotolerans
11 group_1735 F4V73_RS14535 137131 138180 -1 glnL nitrogen regulation protein NR(II) Morganella psychrotolerans
12 group_1735 PMI_RS14250 3161950 3162996 1 glnL nitrogen regulation protein NR(II) Proteus mirabilis HI4320