COG3852
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3852, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 13 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description |
Signal transduction histidine kinase NtrB, nitrogen specific |
Function(s) descr. |
Signal transduction mechanisms (T) |
Occurence in the database
COG3852 is associated with 13 different proteins (see tab "Protein list" and "Profile") |
The 13 proteins are classified into 2 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_2846 |
FBDBKF_10585 |
77354 |
79129 |
1 |
atoS |
two-component system sensor histidine kinase AtoS |
Morganella morganii S1 |
1 |
group_1735 |
FBDBKF_12105 |
75989 |
77038 |
1 |
glnL |
nitrogen regulation protein NR(II) |
Morganella morganii S1 |
2 |
group_1735 |
EHELCC_14200 |
57667 |
58716 |
-1 |
glnL |
nitrogen regulation protein NR(II) |
Morganella morganii S2 |
3 |
group_2846 |
EHELCC_14920 |
77344 |
79119 |
1 |
atoS |
two-component system sensor histidine kinase AtoS |
Morganella morganii S2 |
4 |
group_2846 |
NLDBIP_14750 |
77344 |
79119 |
1 |
atoS |
two-component system sensor histidine kinase AtoS |
Morganella morganii S4 |
5 |
group_1735 |
NLDBIP_15295 |
61604 |
62653 |
-1 |
glnL |
nitrogen regulation protein NR(II) |
Morganella morganii S4 |
6 |
group_2846 |
LHKJJB_14595 |
62607 |
64382 |
-1 |
atoS |
two-component system sensor histidine kinase AtoS |
Morganella morganii S3 |
7 |
group_1735 |
LHKJJB_15315 |
75989 |
77038 |
1 |
glnL |
nitrogen regulation protein NR(II) |
Morganella morganii S3 |
8 |
group_2846 |
HKOGLL_13215 |
62607 |
64382 |
-1 |
atoS |
two-component system sensor histidine kinase AtoS |
Morganella morganii S5 |
9 |
group_1735 |
HKOGLL_14435 |
62652 |
63701 |
1 |
glnL |
nitrogen regulation protein NR(II) |
Morganella morganii S5 |
10 |
group_2846 |
F4V73_RS14295 |
79860 |
81680 |
1 |
atoS |
two-component system sensor histidine kinase AtoS |
Morganella psychrotolerans |
11 |
group_1735 |
F4V73_RS14535 |
137131 |
138180 |
-1 |
glnL |
nitrogen regulation protein NR(II) |
Morganella psychrotolerans |
12 |
group_1735 |
PMI_RS14250 |
3161950 |
3162996 |
1 |
glnL |
nitrogen regulation protein NR(II) |
Proteus mirabilis HI4320 |